Mercurial > repos > cpt > cpt_psm_prep
diff lib/CPT/Bio/DataSource/GenBank.pm @ 1:d724f34e671d draft default tip
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author | cpt |
---|---|
date | Mon, 05 Jun 2023 02:50:07 +0000 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/lib/CPT/Bio/DataSource/GenBank.pm Mon Jun 05 02:50:07 2023 +0000 @@ -0,0 +1,55 @@ +package CPT::Bio::DataSource::GenBank; +no warnings; +use Moose; +with 'CPT::Bio::DataSource'; + +has 'file' => ( is => 'rw', isa => 'Str' ); + + +sub getSeqIO { + my ($self) = @_; + use Bio::SeqIO; + my $seqio = Bio::SeqIO->new( + -file => $self->file(), + -format => 'GenBank', + ); + my @results; + return $seqio; +} + +no Moose; +1; + +__END__ + +=pod + +=encoding UTF-8 + +=head1 NAME + +CPT::Bio::DataSource::GenBank + +=head1 VERSION + +version 1.99.4 + +=head2 getSeqIO + + $gbk_ds->getSeqIO(); + +supposed to return a genabnk DS. Not tested. + +=head1 AUTHOR + +Eric Rasche <rasche.eric@yandex.ru> + +=head1 COPYRIGHT AND LICENSE + +This software is Copyright (c) 2014 by Eric Rasche. + +This is free software, licensed under: + + The GNU General Public License, Version 3, June 2007 + +=cut