Mercurial > repos > cpt > cpt_psm_prep
diff cpt_psm_prep/lib/CPT/Parameter/Option/Genomic_Tag.pm @ 0:e4de0a0e90c8 draft
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author | cpt |
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date | Tue, 05 Jul 2022 05:38:34 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cpt_psm_prep/lib/CPT/Parameter/Option/Genomic_Tag.pm Tue Jul 05 05:38:34 2022 +0000 @@ -0,0 +1,48 @@ +package CPT::Parameter::Option::Genomic_Tag; +use Moose; +with 'CPT::Parameter::Option'; + +my @validKeys = ( "-10_signal", "-35_signal", "3'UTR", "5'UTR", "CAAT_signal", "CDS", "C_region", "D-loop", "D_segment", "GC_signal", "J_segment", "LTR", "N_region", "RBS", "STS", "S_region", "TATA_signal", "V_region", "V_segment", "assembly_gap", "attenuator", "enhancer", "exon", "gap", "gene", "iDNA", "intron", "mRNA", "mat_peptide", "misc_RNA", "misc_binding", "misc_difference", "misc_feature", "misc_recomb", "misc_signal", "misc_structure", "mobile_element", "modified_base", "ncRNA", "old_sequence", "operon", "oriT", "polyA_signal", "polyA_site", "precursor_RNA", "prim_transcript", "primer_bind", "promoter", "protein_bind", "rRNA", "rep_origin", "repeat_region", "sig_peptide", "source", "stem_loop", "tRNA", "terminator", "tmRNA", "transit_peptide", "unsure", "variation", "whole", "all" ); +my %validKeySet = map { $_ => $_ } @validKeys; + +has 'options' => ( is => 'rw', isa => 'HashRef', default => sub { \%validKeySet } ); + + +sub getopt_format { + return '=s'; +} + +no Moose; +1; + +__END__ + +=pod + +=encoding UTF-8 + +=head1 NAME + +CPT::Parameter::Option::Genomic_Tag + +=head1 VERSION + +version 1.99.4 + +=head2 getopt_format + +Returns the format character for a given CPT::Parameter::* type + +=head1 AUTHOR + +Eric Rasche <rasche.eric@yandex.ru> + +=head1 COPYRIGHT AND LICENSE + +This software is Copyright (c) 2014 by Eric Rasche. + +This is free software, licensed under: + + The GNU General Public License, Version 3, June 2007 + +=cut