annotate cpt-macros.xml @ 1:97ef96676b48 draft

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1 <macros>
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2 <xml name="gff_requirements">
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3 <requirements>
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4 <requirement type="package" version="2.7">python</requirement>
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5 <requirement type="package" version="1.65">biopython</requirement>
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6 <requirement type="package" version="2.12.1">requests</requirement>
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7 <yield/>
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8 </requirements>
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9 <version_command>
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10 <![CDATA[
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11 cd '$__tool_directory__' && git rev-parse HEAD
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12 ]]>
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13 </version_command>
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14 </xml>
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15 <xml name="citation/mijalisrasche">
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16 <citation type="doi">10.1371/journal.pcbi.1008214</citation>
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17 <citation type="bibtex">@unpublished{galaxyTools,
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18 author = {E. Mijalis, H. Rasche},
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19 title = {CPT Galaxy Tools},
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20 year = {2013-2017},
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21 note = {https://github.com/tamu-cpt/galaxy-tools/}
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22 }
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23 </citation>
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24 </xml>
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25 <xml name="citations">
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26 <citations>
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27 <citation type="doi">10.1371/journal.pcbi.1008214</citation>
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28 <citation type="bibtex">
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29 @unpublished{galaxyTools,
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30 author = {E. Mijalis, H. Rasche},
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31 title = {CPT Galaxy Tools},
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32 year = {2013-2017},
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33 note = {https://github.com/tamu-cpt/galaxy-tools/}
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34 }
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35 </citation>
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36 <yield/>
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37 </citations>
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38 </xml>
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39 <xml name="citations-crr">
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40 <citations>
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41 <citation type="doi">10.1371/journal.pcbi.1008214</citation>
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42 <citation type="bibtex">
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43 @unpublished{galaxyTools,
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44 author = {C. Ross},
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45 title = {CPT Galaxy Tools},
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46 year = {2020-},
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47 note = {https://github.com/tamu-cpt/galaxy-tools/}
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48 }
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49 </citation>
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50 <yield/>
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51 </citations>
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52 </xml>
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53 <xml name="citations-2020">
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54 <citations>
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55 <citation type="doi">10.1371/journal.pcbi.1008214</citation>
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56 <citation type="bibtex">
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57 @unpublished{galaxyTools,
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58 author = {E. Mijalis, H. Rasche},
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59 title = {CPT Galaxy Tools},
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60 year = {2013-2017},
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61 note = {https://github.com/tamu-cpt/galaxy-tools/}
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62 }
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63 </citation>
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64 <citation type="bibtex">
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65 @unpublished{galaxyTools,
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66 author = {A. Criscione},
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67 title = {CPT Galaxy Tools},
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68 year = {2019-2021},
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69 note = {https://github.com/tamu-cpt/galaxy-tools/}
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70 }
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71 </citation>
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72 <yield/>
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73 </citations>
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74 </xml>
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75 <xml name="citations-2020-AJC-solo">
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76 <citations>
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77 <citation type="doi">10.1371/journal.pcbi.1008214</citation>
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78 <citation type="bibtex">
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79 @unpublished{galaxyTools,
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80 author = {A. Criscione},
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81 title = {CPT Galaxy Tools},
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82 year = {2019-2021},
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83 note = {https://github.com/tamu-cpt/galaxy-tools/}
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84 }
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85 </citation>
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86 <yield/>
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87 </citations>
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88 </xml>
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89 <xml name="citations-clm">
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90 <citations>
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91 <citation type="doi">10.1371/journal.pcbi.1008214</citation>
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92 <citation type="bibtex">
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93 @unpublished{galaxyTools,
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94 author = {C. Maughmer},
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95 title = {CPT Galaxy Tools},
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96 year = {2017-2020},
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97 note = {https://github.com/tamu-cpt/galaxy-tools/}
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98 }
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99 </citation>
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100 <yield/>
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101 </citations>
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102 </xml>
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103 <xml name="sl-citations-clm">
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104 <citation type="bibtex">
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105 @unpublished{galaxyTools,
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106 author = {C. Maughmer},
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107 title = {CPT Galaxy Tools},
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108 year = {2017-2020},
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109 note = {https://github.com/tamu-cpt/galaxy-tools/}
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110 }
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111 </citation>
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112 <yield/>
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113 </xml>
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114 </macros>