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annotate lib/CPT/Analysis/PAUSE/ParsedSam.pm @ 1:97ef96676b48 draft

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author cpt
date Mon, 05 Jun 2023 02:51:26 +0000
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1 package CPT::Analysis::PAUSE::ParsedSam;
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3 # ABSTRACT: Library for use in PAUSE analysis
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4 use strict;
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5 use warnings;
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6 use Moose;
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7 use SVG;
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8
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9 has 'coverage_density' => ( is => 'rw', isa => 'ArrayRef' );
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10 has 'read_starts' => ( is => 'rw', isa => 'ArrayRef' );
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11 has 'read_ends' => ( is => 'rw', isa => 'ArrayRef' );
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12 has 'max' => ( is => 'rw', isa => 'Int' );
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13 has 'stats_start_max' => ( is => 'rw', isa => 'Num' );
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14 has 'stats_end_max' => ( is => 'rw', isa => 'Num' );
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15 has 'stats_start_mean' => ( is => 'rw', isa => 'Num' );
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16 has 'stats_end_mean' => ( is => 'rw', isa => 'Num' );
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17 has 'stats_start_standard_deviation' => ( is => 'rw', isa => 'Num' );
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18 has 'stats_end_standard_deviation' => ( is => 'rw', isa => 'Num' );
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19
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20 no Moose;
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21 1;
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22
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23 __END__
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24
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25 =pod
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26
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27 =encoding UTF-8
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28
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29 =head1 NAME
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31 CPT::Analysis::PAUSE::ParsedSam - Library for use in PAUSE analysis
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32
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33 =head1 VERSION
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34
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35 version 1.96
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36
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37 =head1 AUTHOR
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38
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39 Eric Rasche <rasche.eric@yandex.ru>
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40
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41 =head1 COPYRIGHT AND LICENSE
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42
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43 This software is Copyright (c) 2014 by Eric Rasche.
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44
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45 This is free software, licensed under:
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46
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47 The GNU General Public License, Version 3, June 2007
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48
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49 =cut