annotate lib/CPT/Parameter/File/OutputFormat.pm @ 2:d09346afadfa draft default tip

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date Fri, 05 Jan 2024 05:56:18 +0000
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1 package CPT::Parameter::File::OutputFormat;
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2 use Moose;
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3 with 'CPT::Parameter';
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4
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7 sub galaxy_input {
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8
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9 # Required by our parent. For an output file, this is non-functional
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10 my ( $self, $xml_writer ) = @_;
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11 }
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14 sub galaxy_output {
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15 my ( $self, $xml_writer ) = @_;
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16 }
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17
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18 sub validate_individual {
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19 my ($self, $val) = @_;
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20 return 1;
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21 }
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23
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24 sub getopt_format {
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25 return '=s';
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26 }
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28 no Moose;
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29 1;
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30
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31 __END__
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32
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33 =pod
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34
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35 =encoding UTF-8
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36
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37 =head1 NAME
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38
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39 CPT::Parameter::File::OutputFormat
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40
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41 =head1 VERSION
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42
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43 version 1.99.4
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44
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45 =head2 galaxy_input
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47 $file_param->galaxy_input($xml_writer); # where $file_param is a CPT::Parameter::*
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48
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49 Utilises the $xml_writer to add a <data> block in the <output> section
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50
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51 =head2 galaxy_output
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52
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53 $file_param->galaxy_output($xml_writer); # where $file_param is a CPT::Parameter::*
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54
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55 Utilises the $xml_writer to add a <data> block in the <output> section
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56
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57 =head2 getopt_format
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58
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59 Returns the format character for a given CPT::Parameter::* type
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60
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61 =head1 AUTHOR
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62
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63 Eric Rasche <rasche.eric@yandex.ru>
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64
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65 =head1 COPYRIGHT AND LICENSE
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66
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67 This software is Copyright (c) 2014 by Eric Rasche.
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68
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69 This is free software, licensed under:
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70
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71 The GNU General Public License, Version 3, June 2007
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72
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73 =cut