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planemo upload commit f33bdf952d796c5d7a240b132af3c4cbd102decc
author cpt
date Fri, 05 Jan 2024 05:56:18 +0000
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1
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1 package CPT::Parameter::Int;
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2 use Scalar::Util qw(looks_like_number);
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3 use Moose;
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4 with 'CPT::Parameter';
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5
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6 has 'min' => ( is => 'rw', isa => 'Int' );
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7 has 'max' => ( is => 'rw', isa => 'Int' );
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8
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9
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10
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11 sub galaxy_input {
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12 my ( $self, $xml_writer ) = @_;
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13 $self->handle_possible_galaxy_input_repeat_start($xml_writer);
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14 my %params = $self->get_default_input_parameters('integer');
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15
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16 if(defined $self->min()){
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17 $params{min} = $self->min();
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18 }
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19 if(defined $self->max()){
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20 $params{max} = $self->max();
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21 }
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22 $xml_writer->startTag(
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23 'param',
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24 %params,
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25 );
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26 $xml_writer->endTag('param');
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27 $self->handle_possible_galaxy_input_repeat_end($xml_writer);
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28 }
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29
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30
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31 sub galaxy_output {
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32
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33 }
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34
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35 sub validate_individual {
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36 my ($self, $value) = @_;
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37 if ( looks_like_number( $value ) ) {
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38 # Check bounds
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39 if ( defined $self->max() && $value > $self->max() ) {
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40 push(@{$self->errors()}, sprintf( "Value passed with %s was greater than the allowable upper bound. [%s > %s]", $self->name(), $value, $self->max() ));
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41 return 0;
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42 }
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43 if ( defined $self->min() && $value < $self->min() ) {
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44 push(@{$self->errors()}, sprintf( "Value passed with %s was smaller than the allowable minimum bound. [%s < %s]", $self->name(), $value, $self->min() ));
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45 return 0;
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46 }
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47 return 1;
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48 }
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49 else {
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50 push(@{$self->errors()}, sprintf( "Value passed with %s does not look like a float [%s]", $self->name(), $value ));
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51 return 0;
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52 }
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53 }
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54
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55
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56 sub getopt_format {
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57 return '=i';
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58 }
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59
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60 no Moose;
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61 1;
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62
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63 __END__
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64
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65 =pod
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66
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67 =encoding UTF-8
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68
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69 =head1 NAME
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70
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71 CPT::Parameter::Int
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72
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73 =head1 VERSION
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74
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75 version 1.99.4
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76
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77 =head2 galaxy_input
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78
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79 $file_param->galaxy_input($xml_writer); # where $file_param is a CPT::Parameter::*
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80
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81 Utilises the $xml_writer to add a <data> block in the <output> section
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82
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83 =head2 galaxy_output
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84
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85 $file_param->galaxy_output($xml_writer); # where $file_param is a CPT::Parameter::*
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86
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87 Utilises the $xml_writer to add a <data> block in the <output> section
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88
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89 =head2 getopt_format
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90
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91 Returns the format character for a given CPT::Parameter::* type
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92
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93 =head1 AUTHOR
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94
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95 Eric Rasche <rasche.eric@yandex.ru>
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96
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97 =head1 COPYRIGHT AND LICENSE
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98
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99 This software is Copyright (c) 2014 by Eric Rasche.
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100
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101 This is free software, licensed under:
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102
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103 The GNU General Public License, Version 3, June 2007
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104
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105 =cut