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comparison lib/CPT/Parameter/Option/Genomic_Tag.pm @ 1:97ef96676b48 draft

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planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:51:26 +0000
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0:b18e8268bf4e 1:97ef96676b48
1 package CPT::Parameter::Option::Genomic_Tag;
2 use Moose;
3 with 'CPT::Parameter::Option';
4
5 my @validKeys = ( "-10_signal", "-35_signal", "3'UTR", "5'UTR", "CAAT_signal", "CDS", "C_region", "D-loop", "D_segment", "GC_signal", "J_segment", "LTR", "N_region", "RBS", "STS", "S_region", "TATA_signal", "V_region", "V_segment", "assembly_gap", "attenuator", "enhancer", "exon", "gap", "gene", "iDNA", "intron", "mRNA", "mat_peptide", "misc_RNA", "misc_binding", "misc_difference", "misc_feature", "misc_recomb", "misc_signal", "misc_structure", "mobile_element", "modified_base", "ncRNA", "old_sequence", "operon", "oriT", "polyA_signal", "polyA_site", "precursor_RNA", "prim_transcript", "primer_bind", "promoter", "protein_bind", "rRNA", "rep_origin", "repeat_region", "sig_peptide", "source", "stem_loop", "tRNA", "terminator", "tmRNA", "transit_peptide", "unsure", "variation", "whole", "all" );
6 my %validKeySet = map { $_ => $_ } @validKeys;
7
8 has 'options' => ( is => 'rw', isa => 'HashRef', default => sub { \%validKeySet } );
9
10
11 sub getopt_format {
12 return '=s';
13 }
14
15 no Moose;
16 1;
17
18 __END__
19
20 =pod
21
22 =encoding UTF-8
23
24 =head1 NAME
25
26 CPT::Parameter::Option::Genomic_Tag
27
28 =head1 VERSION
29
30 version 1.99.4
31
32 =head2 getopt_format
33
34 Returns the format character for a given CPT::Parameter::* type
35
36 =head1 AUTHOR
37
38 Eric Rasche <rasche.eric@yandex.ru>
39
40 =head1 COPYRIGHT AND LICENSE
41
42 This software is Copyright (c) 2014 by Eric Rasche.
43
44 This is free software, licensed under:
45
46 The GNU General Public License, Version 3, June 2007
47
48 =cut