diff lib/CPT/Chado/GMOD_Conf.pm @ 1:97ef96676b48 draft

planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:51:26 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/lib/CPT/Chado/GMOD_Conf.pm	Mon Jun 05 02:51:26 2023 +0000
@@ -0,0 +1,75 @@
+package CPT::Chado::GMOD_Conf;
+use Moose;
+
+has 'database_identifier' => ( is => 'rw', isa => 'Str' );
+has 'gmod_root' => ( is => 'rw', isa => 'Str', default => '/usr/share/gmod/' );
+has 'database'  => ( is => 'rw', isa => 'Str' );
+has 'username'  => ( is => 'rw', isa => 'Str' );
+has 'password'  => ( is => 'rw', isa => 'Str' );
+has 'host' => ( is => 'rw', isa => 'Str', default => 'localhost' );
+has 'port' => ( is => 'rw', isa => 'Int', default => 5432 );
+
+sub load_config {
+	my ( $self, $identifier ) = @_;
+	open( my $db_info, '<',
+		$self->gmod_root() . "conf/${identifier}.conf" );
+	while (<$db_info>) {
+		chomp $_;
+		if ( $_ =~ /DBUSER=/ ) {
+			$self->username( substr( $_, 7 ) );
+		}
+		elsif ( $_ =~ /DBPASS=/ ) {
+			$self->password( substr( $_, 7 ) );
+		}
+		elsif ( $_ =~ /DBNAME=/ ) {
+			$self->database( substr( $_, 7 ) );
+		}
+	}
+	close($db_info);
+}
+
+sub get_connector {
+	my ( $self, $identifier ) = @_;
+	$self->load_config($identifier);
+	use DBI;
+	my $dbh = DBI->connect(
+		sprintf(
+			"dbi:Pg:dbname=%s;host=%s;port=%s;",
+			$self->database(), $self->host(), $self->port()
+		),
+		$self->username(),
+		$self->password()
+	);
+	return $dbh;
+}
+
+no Moose;
+1;
+
+__END__
+
+=pod
+
+=encoding UTF-8
+
+=head1 NAME
+
+CPT::Chado::GMOD_Conf
+
+=head1 VERSION
+
+version 1.99.4
+
+=head1 AUTHOR
+
+Eric Rasche <rasche.eric@yandex.ru>
+
+=head1 COPYRIGHT AND LICENSE
+
+This software is Copyright (c) 2014 by Eric Rasche.
+
+This is free software, licensed under:
+
+  The GNU General Public License, Version 3, June 2007
+
+=cut