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view lib/CPT/GenerateTests.pm @ 1:97ef96676b48 draft
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author | cpt |
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date | Mon, 05 Jun 2023 02:51:26 +0000 |
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package CPT::GenerateTests; use Moose; use strict; use warnings; use autodie; sub gen { my ( $self, @tests ) = @_; my $test_count = 0; # Header my @outtext = ( '#!/usr/bin/env perl', 'use strict;', 'use warnings;', 'use Test::More tests => 0;', 'use IPC::Run3 qw(run3);', '', 'my ( @base, @cmd, $in, $out, $err );', '', sprintf("%s = ('perl', '%s');", '@base', $0), 'my %result_files = (', ); my %test_names; # Loop across tests foreach my $test_ref(@tests){ my %test = %{$test_ref}; my %params = %{$test{params}}; my $command_line = ""; foreach(sort(keys(%params))){ $command_line .= "--$_ $params{$_} "; } my %outputs = %{$test{outputs}}; $test_names{$test{test_name}}++; if($test_names{$test{test_name}} > 1){ printf STDERR "Duplicate test found: %s. This will cause fewer tests to be run than expected\n", $test{test_name}; } push(@outtext, sprintf(' "%s" => {', $test{test_name})); push(@outtext, sprintf(' command_line => "%s",', $command_line)); push(@outtext, ' outputs => {'); foreach my $key(keys %outputs){ push(@outtext, sprintf(' "%s" => ["%s", "%s"],', $key, @{$outputs{$key}})); # Add another test $test_count++; $test_count++; } push(@outtext, ' },'); push(@outtext, ' },'); }; push(@outtext, ');'); push(@outtext,''); push(@outtext, 'foreach ( keys(%result_files) ) {'); push(@outtext, ' # run with the command line'); push(@outtext, ' my @cmd1 = ( @base, split( / /, $result_files{$_}{command_line} ) );'); push(@outtext, ' run3 \@cmd1, \$in, \$out, \$err;'); push(@outtext, ' if($err){ print STDERR "Exec STDERR: $err"; }'); push(@outtext, ' if($out){ print STDERR "Exec STDOUT $out"; }'); push(@outtext, ' # and now compare files'); push(@outtext, ' foreach my $file_cmp ( keys( %{$result_files{$_}{outputs}} ) ) {'); push(@outtext, ' my ($gen, $static) = @{$result_files{$_}{outputs}{$file_cmp}};'); push(@outtext, ' my @diff = ( "diff", $gen, $static );'); push(@outtext, ' my ($in_g, $out_g, $err_g);'); push(@outtext, ' run3 \@diff, \$in_g, \$out_g, \$err_g;'); push(@outtext, ' if($err_g) { print STDERR "err_g $err_g\n"; }'); push(@outtext, ' if($out_g) { print STDOUT "out_g $out_g\n"; }'); push(@outtext, ' chomp $out_g;'); push(@outtext, ' is( -e $gen, 1, "[$_] Output file must exist"); '); push(@outtext, ' is( length($out_g), 0, "[$_] Checking validity of output \'$file_cmp\'" );'); push(@outtext, ' unlink $gen;'); push(@outtext, ' }'); push(@outtext, '}'); # Update test counts $outtext[3] = "use Test::More tests => $test_count;"; if($test_count == 0){ return $self->gen_empty(); } return join("\n", @outtext); } sub gen_empty { my ( $self ) = @_; my $test_count = 0; my @outtext = ( '#!/usr/bin/env perl', 'use strict;', 'use warnings;', 'use Test::More skip_all => "No tests defined for ' . $0 .'"', ); return join("\n", @outtext); } no Moose; 1; __END__ =pod =encoding UTF-8 =head1 NAME CPT::GenerateTests =head1 VERSION version 1.99.4 =head2 gen require CPT::GenerateTests; my $tgen = CPT::GenerateTests->new(); $tgen->gen( { test_name => "Default", params => { 'file' => 't/test-files/aa.gbk', 'chromosome' => 'test', 'color' => 'red', 'intensity' => 'vvvvl', }, outputs => { 'result_name' => ['circos_k.txt', 'test-data/circos_k.txt'], } }, ); exit 1; =head1 AUTHOR Eric Rasche <rasche.eric@yandex.ru> =head1 COPYRIGHT AND LICENSE This software is Copyright (c) 2014 by Eric Rasche. This is free software, licensed under: The GNU General Public License, Version 3, June 2007 =cut