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comparison generate-putative-isp.xml @ 6:7a0ed74e9ff8 draft

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planemo upload commit e563355aff813a6412160834ee3dead9414eddc8
author cpt
date Wed, 18 Sep 2024 05:03:59 +0000
parents 0f6659efd912
children f0ca7edbe202
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5:0f6659efd912 6:7a0ed74e9ff8
1 <tool id="edu.tamu.cpt2.spanin.generate-putative-isp" name="ISP candidates" version="1.0"> 1 <tool id="edu.tamu.cpt2.spanin.generate-putative-isp" name="ISP candidates" version="1.0">
2 <description>constructs a putative list of potential i-spanin from an input genomic FASTA</description> 2 <description>constructs a putative list of potential i-spanin from an input genomic FASTA</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"> 6 <requirements>
7 <requirement type="package" version="3.9">python</requirement>
7 <requirement type="package" version="2019.06.08">regex</requirement> 8 <requirement type="package" version="2019.06.08">regex</requirement>
8 <requirement type="package" version="1.77">biopython</requirement> 9 <requirement type="package" version="1.77">biopython</requirement>
9 </expand> 10 <requirement type="package" version="1.2.2">cpt_gffparser</requirement>
11 </requirements>
10 <command detect_errors="aggressive"><![CDATA[ 12 <command detect_errors="aggressive"><![CDATA[
11 python '$__tool_directory__/generate-putative-isp.py' 13 python '$__tool_directory__/generate-putative-isp.py'
12 '$fasta_file' 14 '$fasta_file'
13 --strand '$strand' 15 --strand '$strand'
14 --switch '$switch' 16 --switch '$switch'