Mercurial > repos > cpt > cpt_putative_isp

comparison generate-putative-isp.xml @ 9:9fa911974de6 draft default tip

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planemo upload commit a4912b5d710e0082b764a8c90bf184078e74d83d-dirty
author cpt
date Fri, 20 Sep 2024 03:38:42 +0000
parents b5c1b167df3c
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8:b5c1b167df3c 9:9fa911974de6
1 <tool id="edu.tamu.cpt2.spanin.generate-putative-isp" name="ISP candidates" version="1.0"> 1 <tool id="edu.tamu.cpt2.spanin.generate-putative-isp" name="ISP candidates" version="1.0">
2 <description>constructs a putative list of potential i-spanin from an input genomic FASTA</description> 2 <description>constructs a putative list of potential i-spanin from an input genomic FASTA</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"> 6 <requirements>
7 <requirement type="package" version="3.9">python</requirement>
8 <requirement type="package" version="1.84">biopython</requirement>
7 <requirement type="package" version="2024.9.11">regex</requirement> 9 <requirement type="package" version="2024.9.11">regex</requirement>
8 </expand> 10 </requirements>
9 <command detect_errors="aggressive"><![CDATA[ 11 <command detect_errors="aggressive"><![CDATA[
10 python '$__tool_directory__/generate-putative-isp.py' 12 python '$__tool_directory__/generate-putative-isp.py'
11 '$fasta_file' 13 '$fasta_file'
12 --strand '$strand' 14 --strand '$strand'
13 --switch '$switch' 15 --switch '$switch'