Mercurial > repos > cpt > cpt_putative_isp
diff cpt.py @ 3:08499fbf8697 draft
planemo upload commit 96d9c038cdd9f83fcc55d2f20ab1057129d11589-dirty
| author | cpt |
|---|---|
| date | Wed, 18 Sep 2024 04:02:06 +0000 |
| parents | 4e02e6e9e77d |
| children | bc16792ecfd2 |
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--- a/cpt.py Fri Jan 05 05:56:25 2024 +0000 +++ b/cpt.py Wed Sep 18 04:02:06 2024 +0000 @@ -4,6 +4,7 @@ from Bio import SeqIO from Bio.Data import CodonTable import logging +import re logging.basicConfig() log = logging.getLogger() @@ -147,7 +148,7 @@ if index % 3 != 0: continue n = s[start:index] - for (offset, n, t) in self.start_chop_and_trans(n): + for offset, n, t in self.start_chop_and_trans(n): if n and len(t) >= self.min_len: yield start + offset, n, t start = index @@ -294,7 +295,7 @@ if index % 3 != 0: continue n = s[start:index] - for (offset, n, t) in self.start_chop_and_trans(n): + for offset, n, t in self.start_chop_and_trans(n): if n and len(t) >= self.min_len: yield start + offset, n, t start = index