Mercurial > repos > cpt > cpt_putative_isp

changeset 4:bc16792ecfd2 draft

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planemo upload commit ad5355b899dc8f8300c206522e2a65d49809fb73
author cpt
date Wed, 18 Sep 2024 04:25:38 +0000
parents 08499fbf8697
children 0f6659efd912
files cpt.py generate-putative-isp.py generate-putative-isp.xml
diffstat 3 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/cpt.py	Wed Sep 18 04:02:06 2024 +0000
+++ b/cpt.py	Wed Sep 18 04:25:38 2024 +0000
@@ -4,7 +4,7 @@
 from Bio import SeqIO
 from Bio.Data import CodonTable
 import logging
-import re
+import regex as re
 
 logging.basicConfig()
 log = logging.getLogger()
--- a/generate-putative-isp.py	Wed Sep 18 04:02:06 2024 +0000
+++ b/generate-putative-isp.py	Wed Sep 18 04:25:38 2024 +0000
@@ -5,7 +5,7 @@
 
 import argparse
 from cpt import OrfFinder
-import re
+import regex as re
 from spaninFuncs import *
 
 
--- a/generate-putative-isp.xml	Wed Sep 18 04:02:06 2024 +0000
+++ b/generate-putative-isp.xml	Wed Sep 18 04:25:38 2024 +0000
@@ -4,6 +4,7 @@
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements">
+        <requirement type="package" version="2019.06.08">regex</requirement>
     </expand>
     <command detect_errors="aggressive"><![CDATA[
 python '$__tool_directory__/generate-putative-isp.py'