Mercurial > repos > cpt > cpt_putative_osp

comparison generate-putative-osp.xml @ 3:859e18a9814a draft

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planemo upload commit 09a88823322bf86d7f05f008f9dabdb60a572d3a
author cpt
date Fri, 20 Sep 2024 03:52:11 +0000
parents 05244a021b80
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2:05244a021b80 3:859e18a9814a
1 <tool id="edu.tamu.cpt2.spanin.generate-putative-osp" name="OSP candidates" version="1.0"> 1 <tool id="edu.tamu.cpt2.spanin.generate-putative-osp" name="OSP candidates" version="1.0">
2 <description>constructs a putative list of potential o-spanin from an input genomic FASTA</description> 2 <description>constructs a putative list of potential o-spanin from an input genomic FASTA</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5
6 </macros> 5 </macros>
7 <expand macro="requirements"> 6 <requirements>
8 </expand> 7 <requirement type="package" version="3.9">python</requirement>
8 <requirement type="package" version="1.84">biopython</requirement>
9 <requirement type="package" version="2024.9.11">regex</requirement>
10 </requirements>
9 <command detect_errors="aggressive"><![CDATA[ 11 <command detect_errors="aggressive"><![CDATA[
10 '$__tool_directory__/generate-putative-osp.py' 12 '$__tool_directory__/generate-putative-osp.py'
11 '$fasta_file' 13 '$fasta_file'
12 --strand '$strand' 14 --strand '$strand'
13 --switch '$switch' 15 --switch '$switch'