Mercurial > repos > cpt > cpt_putative_usp

comparison generate-putative-usp.xml @ 3:76a3830e9cb1 draft

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planemo upload commit 09a88823322bf86d7f05f008f9dabdb60a572d3a
author cpt
date Fri, 20 Sep 2024 03:52:29 +0000
parents aacd746d1c8b
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2:aacd746d1c8b 3:76a3830e9cb1
1 <tool id="edu.tamu.cpt2.spanin.generate-putative-usp" name="USP Candidates" version="1.0"> 1 <tool id="edu.tamu.cpt2.spanin.generate-putative-usp" name="USP Candidates" version="1.0">
2 <description>constructs a putative list of potential u-spanin from an input genomic FASTA</description> 2 <description>constructs a putative list of potential u-spanin from an input genomic FASTA</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5
6 </macros> 5 </macros>
7 <expand macro="requirements"> 6 <requirements>
8 </expand> 7 <requirement type="package" version="3.9">python</requirement>
8 <requirement type="package" version="1.84">biopython</requirement>
9 <requirement type="package" version="2024.9.11">regex</requirement>
10 </requirements>
9 <command detect_errors="aggressive"><![CDATA[ 11 <command detect_errors="aggressive"><![CDATA[
10 python '$__tool_directory__/generate-putative-usp.py' 12 python '$__tool_directory__/generate-putative-usp.py'
11 '$fa' 13 '$fa'
12 --strand '$strand' 14 --strand '$strand'
13 --min_size '$min_size' 15 --min_size '$min_size'