# HG changeset patch
# User cpt
# Date 1726804349 0
# Node ID 76a3830e9cb1fa5b6eab0cf146a9cc0f96ad83e8
# Parent  aacd746d1c8b10a93d608b6d0ee72fcc37653a78
planemo upload commit 09a88823322bf86d7f05f008f9dabdb60a572d3a

diff -r aacd746d1c8b -r 76a3830e9cb1 generate-putative-usp.py
--- a/generate-putative-usp.py	Fri Jan 05 05:56:41 2024 +0000
+++ b/generate-putative-usp.py	Fri Sep 20 03:52:29 2024 +0000
@@ -1,12 +1,7 @@
 import argparse
 from cpt import OrfFinder
-from Bio import SeqIO
-from Bio import Seq
-from CPT_GFFParser import gffParse, gffWrite
 from spaninFuncs import *
 import re
-import os
-import sys
 
 """
 ##  Note
diff -r aacd746d1c8b -r 76a3830e9cb1 generate-putative-usp.xml
--- a/generate-putative-usp.xml	Fri Jan 05 05:56:41 2024 +0000
+++ b/generate-putative-usp.xml	Fri Sep 20 03:52:29 2024 +0000
@@ -2,10 +2,12 @@
     <description>constructs a putative list of potential u-spanin from an input genomic FASTA</description>
     <macros>
         <import>macros.xml</import>
-    
     </macros>
-    <expand macro="requirements">
-    </expand>
+    <requirements>
+        <requirement type="package" version="3.9">python</requirement>
+        <requirement type="package" version="1.84">biopython</requirement>
+        <requirement type="package" version="2024.9.11">regex</requirement>
+    </requirements>
     <command detect_errors="aggressive"><![CDATA[
 python '$__tool_directory__/generate-putative-usp.py'
 '$fa'