diff data/attic/lysis-family-expanded_culled.json @ 1:6e3a843b6304 draft

planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author cpt
date Mon, 05 Jun 2023 02:53:18 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data/attic/lysis-family-expanded_culled.json	Mon Jun 05 02:53:18 2023 +0000
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+{
+    "endolysins": [
+        "ampicillin acylase",
+        "serine-type endopeptidase inhibitor complex",
+        "small conjugating protein-specific endopeptidase",
+        "aspartic endopeptidase",
+        "serine protease inhibitor complex",
+        "N-acetylaminohydrolase",
+        "peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase",
+        "NtQ-amidase",
+        "peptidoglycan muralytic",
+        "1,4-beta-poly-N-acetylglucosaminidase",
+        "muralytic",
+        "cysteine-type endopeptidase inhibitor",
+        "endolysin",
+        "amidohydrolase",
+        "acetamidase",
+        "hydrolase",
+        "amidase",
+        "poly[1,4-(N-acetyl-beta-D-glucosaminide)] glycanohydrolase",
+        "muramidase",
+        "beta-1,4-poly-N-acetyl glucosamidinase",
+        "semacylase",
+        "benzylpenicillin acylase",
+        "penicillin amidohydrolase",
+        "glycosidase",
+        "lysozyme inhibitor",
+        "serine-type endopeptidase complex",
+        "muraminidase",
+        "peptidoglycan N-acetylmuramoylhydrolase",
+        "alpha-acylamino-beta-lactam acylhydrolase",
+        "protein-N-terminal glutamine amidohydrolase",
+        "penicillin acylase",
+        "threonine-type endopeptidase",
+        "prevention of cysteine-type endopeptidase",
+        "endopeptidase inhibitor",
+        "poly-beta-glucosaminidase",
+        "lysin",
+        "endopeptidase regulator",
+        "serpin complex",
+        "endopeptidase",
+        "alpha-keto acid-omega-amidase",
+        "peptidoglycan cross-bridge peptide endopeptidase",
+        "acylase",
+        "palmitoleoyl [acyl-carrier protein]-dependent acyltransferase",
+        "activation of cysteine-type endopeptidase",
+        "cysteine-type endopeptidase",
+        "acylamidase",
+        "aspartic-type endopeptidase",
+        "thiol endopeptidase",
+        "fatty acylamidase",
+        "lysozyme",
+        "cytolysis",
+        "w-amidase",
+        "ubiquitin-like protein-specific endopeptidase",
+        "peptidoglycan endopeptidase",
+        "endopeptidase complex",
+        "threonine endopeptidase",
+        "serine-type endopeptidase inhibitor",
+        "acylamide amidohydrolase",
+        "endopeptidase activator",
+        "chitodextrinase",
+        "calcium-dependent cysteine-type endopeptidase",
+        "aspartic-type endopeptidase inhibitor",
+        "omega-amidodicarboxylate amidohydrolase",
+        "chitinase",
+        "PNGase",
+        "N-linked-glycopeptide-(N-acetyl-beta-D-glucosaminyl)-L-asparagine amidohydrolase",
+        "serine-type endopeptidase",
+        "mucopeptide glucohydrolase",
+        "penicillin amidase",
+        "omega-amidase",
+        "carboxypeptidase",
+        "glycosylase",
+        "N,O-diacetylmuramidase",
+        "mucopeptide N-acetylmuramoylhydrolase",
+        "peptidoglycan stem peptide endopeptidase",
+        "1,4-N-acetylmuramidase"
+    ],
+    "holins": [
+        "holin",
+        "pinholin",
+        "cytolysis",
+        "canonical holin",
+        "antiholin",
+        "anti-holin",
+        "anti-holins",
+        "co-holin",
+        "co-holins"
+    ],
+    "ECDs": [
+        "endo-beta-(1->4)-N-acetylglucosaminidase",
+        "lytic endotransglycosylase",
+        "aspartylglucosylaminidase",
+        "alpha-glucan-branching glycosyltransferase",
+        "aspartylglucosylaminase",
+        "beta-aspartylglucosylamine amidohydrolase",
+        "alpha-N-acetyl-D-glucosaminide N-acetylglucosaminohydrolase",
+        "glycosylasparaginase",
+        "poly-beta-glucosaminidase",
+        "chitosan glucosaminohydrolase",
+        "endo-N-acetyl-beta-D-glucosaminidase",
+        "beta-D-N-acetylhexosaminidase",
+        "Glucosaminidase",
+        "N,N'-diacetylchitobiosyl beta-N-acetylglucosaminidase",
+        "Peptidase_M23",
+        "glucosan transglycosylase",
+        "endoglycosidase S",
+        "mannosyl-glycoprotein endo-beta-N-acetylglucosamidase",
+        "transferase",
+        "N-acetyl-alpha-glucosaminidase",
+        "4-N-(beta-N-acetyl-D-glucosaminyl)-L-asparagine amidohydrolase",
+        "N4-(beta-N-acetylglucosaminyl)-L-asparaginase",
+        "lytic viral release",
+        "N-acetylhexosaminidase",
+        "1,4-alpha-D-glucan:1,4-alpha-D-glucan 4-alpha-D-glycosyltransferase",
+        "viral penetration via lysis of host organellar membrane",
+        "glycogen branching enzyme",
+        "viral release by cell lysis",
+        "N-acetyl-beta-glucosaminidase",
+        "glycosyltransferase",
+        "beta-N-acetyl-D-hexosaminidase",
+        "beta-N-acetylhexosaminidase",
+        "Glyco_hydro_19",
+        "peptidoglycan lytic transglycosylase",
+        "N-acetyl-alpha-D-glucosaminidase",
+        "Glyco_hydro_25",
+        "poly[1,4-(N-acetyl-beta-D-glucosaminide)] glycanohydrolase",
+        "amylo-(1,4->1,6)-transglycosylase",
+        "exo-beta-D-glucosaminidase",
+        "endo-beta-N-acetylglucosaminidase H",
+        "glycopeptide-D-mannosyl-N4-(N-acetyl-D-glucosaminyl)2-asparagine 1,4-N-acetyl-beta-glucosaminohydrolase",
+        "exo-1,4-beta-D-glucosaminidase",
+        "N-acetyl-beta-D-hexosaminidase",
+        "chitosan exo-1,4-beta-D-glucosaminidase",
+        "Peptidase_U40",
+        "endo-beta-N-acetylglucosaminidase",
+        "alpha-acetylglucosaminidase",
+        "NLPC_P60",
+        "endo-beta-N-acetylglucosaminidase L",
+        "amylo-(1,4 to 1,6)transglucosidase",
+        "VanY",
+        "branching glycosyltransferase",
+        "beta-hexosaminidase",
+        "amylomaltase",
+        "amylose isomerase",
+        "sucrose:1,6-alpha-D-glucan 3-alpha- and 6-alpha-glucosyltransferase",
+        "Chitinase",
+        "NAG",
+        "dextrin transglycosylase",
+        "YkuD",
+        "endo-N-acetyl-beta-glucosaminidase",
+        "alpha-N-acetylglucosaminidase",
+        "Glyco_hydro_108",
+        "peptidoglycan TGase",
+        "lytic transglycosylase",
+        "N-aspartyl-beta-glucosaminidase",
+        "exochitosanase",
+        "beta-1,4-poly-N-acetyl glucosamidinase",
+        "alpha-D-2-acetamido-2-deoxyglucosidase",
+        "mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase",
+        "viral release from host cell by cytolysis",
+        "sucrose:1,6-alpha-D-glucan 3(6)-alpha-D-glucosyltransferase",
+        "aspartylglucosaminidase",
+        "Amidase_3",
+        "oligo-1,4-1,4-glucantransferase",
+        "Peptidase_M15_3",
+        "DUF3597",
+        "1,4-alpha-glucan branching enzyme",
+        "beta-acetylaminodeoxyhexosidase",
+        "undecaprenyldiphospho-N-acetyl-D-glucosaminyl-(1->4)-(N-acetyl-D-muramoylpentapeptide):undecaprenyldiphospho-(N-acetyl-D-glucosaminyl-(1->4)-N-acetyl-D-muramoylpentapeptide) disaccharidetransferase",
+        "beta-acetylhexosaminidinase",
+        "viral release by host cell lysis",
+        "2-acetamido-4-O-(2-amino-2-deoxy-beta-D-glucopyranosyl)-2-deoxy-D-glucose exo-beta-D-glucosaminidase",
+        "alpha-1,4-glucan:alpha-1,4-glucan-6-glycosyltransferase",
+        "lysis of host organelle involved in viral entry into host cell",
+        "non-lytic viral release",
+        "endo-beta-N-acetylglucosaminidase D",
+        "chitodextrinase",
+        "Amidase02_C",
+        "Transglycosylase",
+        "beta-N-acetyl-D-hexosaminide N-acetylhexosaminohydrolase",
+        "N4-(beta-N-acetyl-D-glucosaminyl)-L-asparagine amidohydrolase",
+        "mannosyl-glycoprotein 1,4-N-acetamidodeoxy-beta-D-glycohydrolase",
+        "chitinase",
+        "transglycosidase",
+        "di-N-acetylchitobiosyl beta-N-acetylglucosaminidase",
+        "soluble lytic transglycosylase",
+        "Amidase_5",
+        "glucosyl-N-acetylglucosamine glucosaminidase",
+        "1,4-beta-poly-N-acetylglucosaminidase",
+        "viral exit from host cell by cytolysis",
+        "endo-beta-N-acetylglucosaminidase F",
+        "beta-D-hexosaminidase",
+        "peptidoglycan transglycosylase",
+        "NlpD",
+        "peptidoglycan glycosyltransferase",
+        "1,4-glucan-6-(1,4-glucano)-transferase",
+        "Peptidase_M15_4",
+        "Amidase_2",
+        "transglycosylase",
+        "debranching enzyme maltodextrin glycosyltransferase",
+        "aspartylglycosylamine amidohydrolase",
+        "N-acetyl-beta-hexosaminidase",
+        "sucrose-1,6-alpha-glucan 3(6)-alpha-glucosyltransferase",
+        "Peptidase_C39_2",
+        "aspartylglucosylamine deaspartylase",
+        "PG-II",
+        "glycopeptide-D-mannosyl-4-N-(N-acetyl-D-glucosaminyl)2-asparagine 1,4-N-acetyl-beta-glucosaminohydrolase",
+        "bactoprenyldiphospho-N-acetylmuramoyl-(N-acetyl-D-glucosaminyl)-pentapeptide:peptidoglycan N-acetylmuramoyl-N-acetyl-D-glucosaminyltransferase",
+        "1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-alpha-D-(1,4-alpha-D-glucano)-transferase",
+        "4-alpha-glucanotransferase",
+        "endo-beta-acetylglucosaminidase",
+        "endoglycosidase H"
+    ],
+    "ECDs_accro": [
+        "PET-15-4",
+        "PET-M23",
+        "PET-15-3",
+        "AMIO2-C",
+        "NLPD",
+        "NLPC-P60",
+        "PET-U40",
+        "GH19",
+        "GH108",
+        "GyH",
+        "GH25",
+        "AMI-2",
+        "AMI-3",
+        "AMI-5",
+        "PET-C39-2",
+        "GLUCO",
+        "VANY",
+        "CHAP",
+        "YKUD",
+        "TRANG",
+        "DUF",
+        "SLT"
+    ],
+    "CBDs": [
+        "Cpl-7",
+        "SH3-related",
+        "FOG",
+        "PG_binding_1",
+        "ChW",
+        "LysM",
+        "LGFP",
+        "SH3_3",
+        "SH3_5",
+        "SLAP",
+        "PG_binding_3",
+        "SH3b",
+        "SPOR"
+    ],
+    "CBDs_accro": [
+        "FOG",
+        "LYSM",
+        "LGFP",
+        "CPL7",
+        "SH3-r",
+        "PG-1",
+        "SH3-5",
+        "CHW",
+        "PG-3",
+        "SLAP",
+        "SPOR",
+        "SH3b",
+        "SH3-3"
+    ]
+}
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