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diff data/attic/lysis-family-v1.0.2.json @ 1:6e3a843b6304 draft
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author | cpt |
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date | Mon, 05 Jun 2023 02:53:18 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data/attic/lysis-family-v1.0.2.json Mon Jun 05 02:53:18 2023 +0000 @@ -0,0 +1,629 @@ +{ + "endolysins": [ + "serine protease inhibitor complex", + "lysin", + "peptidoglycan stem peptide endopeptidase", + "serpin complex", + "peptidoglycan endopeptidase", + "mucopeptide N-acetylmuramoylhydrolase", + "peptidoglycan muralytic", + "omega-amidase", + "protein-N-terminal glutamine amidohydrolase", + "glycosylase", + "threonine endopeptidase", + "w-amidase", + "serine-type endopeptidase inhibitor complex", + "beta-1,4-poly-N-acetyl glucosamidinase", + "muralytic", + "omega-amidodicarboxylate amidohydrolase", + "endopeptidase activator", + "lysozyme inhibitor", + "threonine-type endopeptidase", + "hydrolase", + "endopeptidase regulator", + "endopeptidase", + "penicillin amidohydrolase", + "poly[1,4-(N-acetyl-beta-D-glucosaminide)] glycanohydrolase", + "1,4-N-acetylmuramidase", + "benzylpenicillin acylase", + "aspartic-type endopeptidase inhibitor", + "endolysin", + "acylamide amidohydrolase", + "cytolysis", + "prevention of cysteine-type endopeptidase", + "carboxypeptidase", + "alpha-keto acid-omega-amidase", + "fatty acylamidase", + "acylamidase", + "calcium-dependent cysteine-type endopeptidase", + "lysozyme", + "activation of cysteine-type endopeptidase", + "serine-type endopeptidase", + "small conjugating protein-specific endopeptidase", + "amidohydrolase", + "peptidoglycan N-acetylmuramoylhydrolase", + "acetamidase", + "ubiquitin-like protein-specific endopeptidase", + "chitodextrinase", + "aspartic-type endopeptidase", + "palmitoleoyl [acyl-carrier protein]-dependent acyltransferase", + "muramidase", + "endopeptidase complex", + "N-acetylaminohydrolase", + "endopeptidase inhibitor", + "semacylase", + "penicillin acylase", + "PNGase", + "penicillin amidase", + "acylase", + "NtQ-amidase", + "N-linked-glycopeptide-(N-acetyl-beta-D-glucosaminyl)-L-asparagine amidohydrolase", + "alpha-acylamino-beta-lactam acylhydrolase", + "serine-type endopeptidase inhibitor", + "poly-beta-glucosaminidase", + "glycosidase", + "mucopeptide glucohydrolase", + "serine-type endopeptidase complex", + "cysteine-type endopeptidase inhibitor", + "amidase", + "peptidoglycan cross-bridge peptide endopeptidase", + "cysteine-type endopeptidase", + "1,4-beta-poly-N-acetylglucosaminidase", + "chitinase", + "muraminidase", + "ampicillin acylase", + "peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase", + "thiol endopeptidase", + "aspartic endopeptidase", + "N,O-diacetylmuramidase" + ], + "holins": [ + "canonical holin", + "holin", + "antiholin", + "cytolysis", + "pinholin", + "anti-holin", + "anti-holins", + "co-holin", + "co-holins" + ], + "endolysin_domains": [ + "2-acetamido-4-O-(2-amino-2-deoxy-beta-D-glucopyranosyl)-2-deoxy-D-glucose exo-beta-D-glucosaminidase", + "aspartylglycosylamine amidohydrolase", + "4-N-(beta-N-acetyl-D-glucosaminyl)-L-asparagine amidohydrolase", + "endo-beta-N-acetylglucosaminidase L", + "exo-beta-D-glucosaminidase", + "alpha-N-acetylglucosaminidase", + "sucrose:1,6-alpha-D-glucan 3(6)-alpha-D-glucosyltransferase", + "peptidoglycan lytic transglycosylase", + "N-acetylhexosaminidase", + "endo-beta-N-acetylglucosaminidase H", + "viral exit from host cell by cytolysis", + "glycopeptide-D-mannosyl-4-N-(N-acetyl-D-glucosaminyl)2-asparagine 1,4-N-acetyl-beta-glucosaminohydrolase", + "N-acetyl-beta-glucosaminidase", + "beta-aspartylglucosylamine amidohydrolase", + "N4-(beta-N-acetyl-D-glucosaminyl)-L-asparagine amidohydrolase", + "endo-N-acetyl-beta-glucosaminidase", + "alpha-N-acetyl-D-glucosaminide N-acetylglucosaminohydrolase", + "alpha-acetylglucosaminidase", + "alpha-D-2-acetamido-2-deoxyglucosidase", + "soluble lytic transglycosylase", + "4-alpha-glucanotransferase", + "beta-acetylhexosaminidinase", + "non-lytic viral release", + "viral release by cell lysis", + "Peptidase_M15_3", + "beta-hexosaminidase", + "Peptidase_M15_4", + "DUF3597", + "YkuD", + "endo-beta-(1->4)-N-acetylglucosaminidase", + "Peptidase_M23", + "beta-1,4-poly-N-acetyl glucosamidinase", + "peptidoglycan glycosyltransferase", + "lysis of host organelle involved in viral entry into host cell", + "poly[1,4-(N-acetyl-beta-D-glucosaminide)] glycanohydrolase", + "aspartylglucosylaminidase", + "transferase", + "beta-N-acetyl-D-hexosaminide N-acetylhexosaminohydrolase", + "N-acetyl-alpha-D-glucosaminidase", + "Peptidase_U40", + "sucrose:1,6-alpha-D-glucan 3-alpha- and 6-alpha-glucosyltransferase", + "endo-N-acetyl-beta-D-glucosaminidase", + "viral release from host cell by cytolysis", + "endoglycosidase S", + "beta-D-hexosaminidase", + "undecaprenyldiphospho-N-acetyl-D-glucosaminyl-(1->4)-(N-acetyl-D-muramoylpentapeptide):undecaprenyldiphospho-(N-acetyl-D-glucosaminyl-(1->4)-N-acetyl-D-muramoylpentapeptide) disaccharidetransferase", + "transglycosidase", + "mannosyl-glycoprotein endo-beta-N-acetylglucosamidase", + "mannosyl-glycoprotein 1,4-N-acetamidodeoxy-beta-D-glycohydrolase", + "chitosan glucosaminohydrolase", + "aspartylglucosaminidase", + "oligo-1,4-1,4-glucantransferase", + "peptidoglycan transglycosylase", + "endo-beta-N-acetylglucosaminidase", + "Amidase_5", + "Glyco_hydro_19", + "amylomaltase", + "lytic transglycosylase", + "1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-alpha-D-(1,4-alpha-D-glucano)-transferase", + "beta-acetylaminodeoxyhexosidase", + "peptidoglycan TGase", + "dextrin transglycosylase", + "amylo-(1,4 to 1,6)transglucosidase", + "alpha-1,4-glucan:alpha-1,4-glucan-6-glycosyltransferase", + "aspartylglucosylamine deaspartylase", + "exochitosanase", + "Glyco_hydro_25", + "glycosyltransferase", + "N-acetyl-beta-D-hexosaminidase", + "chitosan exo-1,4-beta-D-glucosaminidase", + "mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase", + "lytic endotransglycosylase", + "NLPC_P60", + "beta-N-acetyl-D-hexosaminidase", + "lytic viral release", + "VanY", + "N-acetyl-beta-hexosaminidase", + "N-aspartyl-beta-glucosaminidase", + "amylo-(1,4->1,6)-transglycosylase", + "beta-D-N-acetylhexosaminidase", + "exo-1,4-beta-D-glucosaminidase", + "glucosan transglycosylase", + "aspartylglucosylaminase", + "Glyco_hydro_108", + "amylose isomerase", + "N-acetyl-alpha-glucosaminidase", + "Glucosaminidase", + "N4-(beta-N-acetylglucosaminyl)-L-asparaginase", + "Amidase_2", + "alpha-glucan-branching glycosyltransferase", + "1,4-alpha-D-glucan:1,4-alpha-D-glucan 4-alpha-D-glycosyltransferase", + "glycopeptide-D-mannosyl-N4-(N-acetyl-D-glucosaminyl)2-asparagine 1,4-N-acetyl-beta-glucosaminohydrolase", + "endoglycosidase H", + "debranching enzyme maltodextrin glycosyltransferase", + "Transglycosylase", + "bactoprenyldiphospho-N-acetylmuramoyl-(N-acetyl-D-glucosaminyl)-pentapeptide:peptidoglycan N-acetylmuramoyl-N-acetyl-D-glucosaminyltransferase", + "Amidase02_C", + "Chitinase", + "1,4-alpha-glucan branching enzyme", + "glucosyl-N-acetylglucosamine glucosaminidase", + "glycosylasparaginase", + "beta-N-acetylhexosaminidase", + "PG-II", + "di-N-acetylchitobiosyl beta-N-acetylglucosaminidase", + "1,4-glucan-6-(1,4-glucano)-transferase", + "sucrose-1,6-alpha-glucan 3(6)-alpha-glucosyltransferase", + "chitodextrinase", + "glycogen branching enzyme", + "endo-beta-N-acetylglucosaminidase D", + "NlpD", + "Peptidase_C39_2", + "endo-beta-acetylglucosaminidase", + "branching glycosyltransferase", + "viral release by host cell lysis", + "N,N'-diacetylchitobiosyl beta-N-acetylglucosaminidase", + "poly-beta-glucosaminidase", + "transglycosylase", + "viral penetration via lysis of host organellar membrane", + "NAG", + "1,4-beta-poly-N-acetylglucosaminidase", + "chitinase", + "endo-beta-N-acetylglucosaminidase F", + "Amidase_3", + "VANY", + "PET-C39-2", + "TRANG", + "PET-15-4", + "AMI-5", + "PET-U40", + "NLPC-P60", + "PET-M23", + "YKUD", + "GH25", + "GH19", + "CHAP", + "PET-15-3", + "GLUCO", + "GH108", + "NLPD", + "AMI-2", + "SLT", + "AMI-3", + "AMIO2-C", + "GyH", + "SLAP", + "FOG", + "PG_binding_1", + "SH3b", + "PG_binding_3", + "SH3-related", + "ChW", + "SH3_3", + "SH3_5", + "Cpl-7", + "LGFP", + "SPOR", + "LysM", + "CPL7", + "SH3-3", + "SLAP", + "FOG", + "SH3b", + "SH3-r", + "CHW", + "PG-3", + "PG-1", + "LGFP", + "LYSM", + "SPOR", + "SH3-5", + "cell wall amidase", + "CWA", + "N-acetylmuramoyl-L-alanine amidase of type 2", + "NALAA-2", + "IPR002502", + "PF01510", + "SM00644", + "SSF55846", + "G3DSA:3.40.80.10", + "CD06583", + "SLT1", + "soluble lytic murein transglycosylase of type 1", + "IPR010618", + "TG", + "IPR010618 (transglycosylase)", + "PGB1", + "peptidoglycan binding domain type 1", + "IPR002477", + "sporulation-related", + "IPR007730", + "sarcoma [src] homology 3 of type 3", + "PF08329 (SH3-3)", + "sarcoma [src] homology 3 of type 5", + "PF08460 (SH3-5)", + "sarcoma [src] homology 3 of type 8", + "SH3-8", + "PF13457", + "S-layer protien", + "IPR024968", + "lysin motif", + "IPR018392", + "CW7", + "cell wall binding domain of Cpl-7", + "IPR013168", + "SLH", + "S-layer homology domain", + "IPR001119", + "CWB1", + "cell wall binding repeat of type 1", + "IPR018337", + "CWB2", + "cell wall binding repeat of type 2", + "IPR007253", + "clostridial hydrophobic repeat with a conserved W residue", + "IPR006637", + "N-acetylmuramoyl-L-alanine amidase of type 3", + "NALAA-3", + "IPR002508", + "PF01520", + "SM00646", + "G3DSA:3.40.630.40", + "CD2696", + "AMIN", + "N-terminal nonamidase", + "IPR021731", + "SH3-4", + "sarcoma [src] homology 3 of type 4", + "PF06347", + "N-acetylmuramoyl-L-alanine amidase of type 5", + "NALAA-5", + "IPR008044", + "PF05382", + "cell wall glycosidases", + "CWG", + "glycoside hydrolase family 3", + "GHF-3", + "IPR002772", + "IPR001764", + "PF01915", + "SSF52279", + "G3DSA:3.40.50.1700", + "PF00933", + "PR00133", + "G3DSA:3.20.20.300", + "CWBD1", + "LPXTG", + "glycoside hydrolase family 73", + "GHF-73", + "IPR002901", + "PF01832", + "SM00047", + "MltG", + "membrane-bound lytic transglycosylase of type G", + "IPR003770", + "CWBD2", + "glycoside hydrolase family 22", + "GHF-22", + "IPR001916", + "PF00062", + "glycoside hydrolase family 24", + "GHF-24", + "IPR002196", + "2ANV", + "2ANX", + "glycoside hydrolase family 25", + "GHF-25", + "IPR002053", + "PF01183", + "cell wall peptidase", + "CWP", + "cysteine histidine-dependent amidohydrolases/peptidase", + "IPR007921", + "PF05257", + "PS50911", + "SleB", + "Spore cortex-lytic enzyme of Bacilus", + "IPR011105", + "SLT2", + "soluble lytic murein transglycosylase of type 2", + "IPR031304", + "N lipoprotein C/protein of 60-kDa", + "NlpC/P60", + "IPR000064", + "PF0877", + "G3DSA:3.90.1720.10", + "PGB2", + "peptidoglycan binding domain of type 2", + "IPR014927", + "SH3-1", + "sarcoma [src] homology 3 of type 1", + "PF00018", + "SH3-2", + "sarcoma [src] homology 3 of type 2", + "PF07653", + "SH3-6", + "sarcoma [src] homology 3 of type 6", + "PF12913", + "SH3-7", + "sarcoma [src] homology 3 of type 7", + "PF12914", + "Peptidase M14", + "PM14", + "IPR000834", + "PF00246", + "PS00132", + "PR00765", + "SM00631", + "Peptidase M15", + "PM15", + "IPR000755", + "PF01427", + "MF01924", + "PIRSF026671", + "PGB3", + "peptidoglycan binding domain of type 3", + "IPR018537", + "Peptidase M23", + "PM23", + "IPR016047", + "PF01551", + "RlpA", + "rare lipoprotein A", + "IPR034718", + "SH3-9", + "sarcoma [src] homology 3 of type 9", + "PF14604", + "Peptidase M74", + "PM74", + "IPR005073", + "PF03411", + "MF01623", + "PIRSF018455", + "Peptidase S11", + "PS11", + "IPR001967", + "PF00768", + "Peptidase S13", + "PS13", + "IPR000667", + "PF02113", + "TIGR00666", + "PR0922", + "Peptidase S66", + "PS66", + "IPR003507", + "PF02016", + "PIRSF028757", + "Transpeptidase", + "TP", + "IPR0005490", + "PF03734", + "PGB4", + "peptidoglycan binding domain of type 4", + "IPR022029" + ], + "spanin_domains": [ + "IPR020000", + "Bacteriophage P2, LysB", + "IPR020130", + "Spanin, outer lipoprotein subunit, T7likevirus", + "IPR016417", + "Spanin, inner membrane subunit, T7likevirus-type", + "TIGR03495", + "phage lysis regulatory protein, LysB family", + "IPR004929", + "Spanin, inner membrane subunit", + "IPR010346", + "Spanin, outer membrane subunit", + "PF17531", + "outer-membrane spanin sub-unit", + "MF_04137", + "PF06085", + "Lipoprotein Rz1 precursor" + ], + "holin_domains": [ + "IPR006479", + "PF07332", + "Putative Actinobacterial Holin-X, holin superfamily III", + "IPR007953", + "Holin-like, BlyB", + "IPR006485", + "Bacteriophage holin", + "IPR020109", + "Holin, r1t-type", + "IPR009937", + "IPR007633", + "Bacteriophage P2, GpY, holin", + "IPR032111", + "Clostridium phage holin", + "IPR020982", + "Bacteriophage T4, GpT, holin", + "IPR006480", + "Bacteriophage holin family", + "IPR006493", + "Holin, BlyA", + "IPR009708", + "Bacteriophage A118-like, holin/antiholin", + "IPR032124", + "Bacteriophage F116-like holin", + "IPR032127", + "LydA-holin antagonist LydB", + "IPR032118", + "Bacteriophage holin HP1 family", + "PF04531", + "PF04688", + "SPP1 phage holin", + "PF04971", + "Bacteriophage P21 holin S", + "IPR032126", + "LydA-like holin", + "PF16079", + "Phage holin family Hol44, in holin superfamily V", + "PF16084", + "LydA-holin antagonist", + "PF04550", + "Phage holin family 2", + "PF06946", + "Bacteriophage A118-like holin, Hol118", + "PF05105", + "PF16080", + "Bacteriophage holin family HP1", + "TIGR01598", + "holin, phage phi LC3 family", + "PF05102", + "holin, BlyA family", + "IPR021497", + "Holin of 3TMs, for gene-transfer release", + "IPR023760", + "Holin-like protein CidA", + "PF16083", + "LydA holin phage, holin superfamily III", + "PF10960", + "BhlA holin family", + "TIGR01606", + "holin, BlyA family", + "PF11031", + "Bacteriophage T holin", + "PF16082", + "Bacteriophage holin family, superfamily II-like", + "TIGR01673", + "phage holin, LL-H family", + "PF11351", + "IPR007054", + "Lysis protein S", + "IPR007165", + "Mycobacterial 4 TMS phage holin, superfamily IV", + "PF09682", + "Bacteriophage holin of superfamily 6 (Holin_LLH)", + "IPR031614", + "Putative holin", + "PF05449", + "Putative 3TM holin, Phage_holin_3", + "IPR019715", + "Haemolysin XhlA", + "IPR005538", + "LrgA/CidA family", + "IPR034696", + "Antiholin T4 type", + "IPR008473", + "Putative 3TM holin, Phage holin 3", + "MF_04104", + "MF_04108", + "PF04020", + "IPR031612", + "Putative phage holin", + "IPR032128", + "Pyocin R2, holin", + "IPR032121", + "Mycobacterial phage holin", + "Antiholin-like protein LrgA", + "IPR024891", + "Antiholin-like protein LrgB", + "IPR019682", + "Bacteriophage T7, Gp17.5, holin", + "IPR032637", + "Putative phage holin-like", + "IPR006481", + "Bacteriophage lambda, GpS, holin", + "PF05289", + "Borrelia hemolysin accessory protein", + "IPR007300", + "CidB/LrgB family", + "PF16936", + "IPR010026", + "Phage holin, LL-H family", + "IPR025140", + "Putative 2/3 transmembrane domain holin", + "IPR031616", + "Putative Holin-like Toxin (Hol-Tox)", + "PF10746", + "Phage holin T7 family, holin superfamily II", + "PF16931", + "TIGR01592", + "holin, SPP1 family", + "TIGR01594", + "phage holin, lambda family", + "PF16938", + "Putative phage holin Dp-1", + "TIGR01593", + "toxin secretion/phage lysis holin", + "MF_01143", + "Holin-like protein CidA [cidA]", + "PF16085", + "Bacteriophage holin Hol, superfamily III", + "PF05106", + "Phage holin family (Lysis protein S)", + "PF13272", + "PF16935", + "PF16945", + "Putative lactococcus lactis phage r1t holin", + "PF17368", + "Spore morphogenesis and germination YwcE", + "PF16081", + "Mycobacterial 2 TMS Phage Holin (M2 Hol) Family" + ], + "spanins": [ + "isp", + "osp", + "usp", + "ISP", + "OSP", + "USP", + "EOS", + "OOS", + "SOS", + "SIS", + "OIS", + "EIS", + "embedded", + "overlapping", + "separated", + "unimolecular", + "spanin", + "Rz", + "outer membrane spanin", + "inner membrane spanin" + ] +} \ No newline at end of file