Mercurial > repos > cpt > cpt_wig_bigwig
view fasta_len.py @ 4:dd14a8d8f884 draft default tip
planemo upload commit f33bdf952d796c5d7a240b132af3c4cbd102decc
author | cpt |
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date | Fri, 05 Jan 2024 05:57:49 +0000 |
parents | b741d86046a6 |
children |
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#!/usr/bin/env python import argparse from Bio import SeqIO import sys if __name__ == "__main__": parser = argparse.ArgumentParser() parser.add_argument("fasta", type=argparse.FileType("r")) args = parser.parse_args() for record in SeqIO.parse(args.fasta, "fasta"): sys.stdout.write("%s\t%s\n" % (record.id, len(record)))