--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/lcb_split.xml	Mon Jun 05 02:54:34 2023 +0000
@@ -0,0 +1,35 @@
+<tool id="edu.tamu.cpt.xmfa.split" name="Split LCBs into smaller LCBs" version="@WRAPPER_VERSION@.0">
+    <description/>
+    <macros>
+        <import>macros.xml</import>
+        <import>cpt-macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <command detect_errors="aggressive"><![CDATA[
+'python $__tool_directory__/lcb_split.py'
+@XMFA_INPUT@
+--window_size '$window_size'
+--threshold '$threshold'
+> '$output'
+]]></command>
+    <inputs>
+        <expand macro="xmfa_input"/>
+        <param type="integer" name="window_size" value="10" label="Default window size generating smaller LCBs"/>
+        <param type="float" name="threshold" value="0.7" min="0" max="1" label="Threshold at which a given genome is part of the new small LCBs"/>
+    </inputs>
+    <outputs>
+        <data format="xmfa" name="output"/>
+    </outputs>
+    <help><![CDATA[
+**What it does**
+
+Helps reduce large and non-sensical protein LCBs into real protein alignments.
+
+**WARNING**
+
+Probably does not work if you have - strand genes. Need to test.
+
+]]></help>
+    <!-- TODO -->
+    <expand macro="citations"/>
+</tool>