# HG changeset patch # User cropgeeks # Date 1487071851 18000 # Node ID 830715268b525af862cee37ec4ca63fdc8177c5b Uploaded diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/flapjack.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cropgeeks_flapjack/flapjack.xml Tue Feb 14 06:30:51 2017 -0500 @@ -0,0 +1,37 @@ + + convert a Flapjack-formatted genotype file into HDF5 + java -Xmx$memory -cp $__tool_directory__/lib/flapjack.jar jhi.flapjack.io.cmd.FJTabbedToHdf5Converter -genotypes=$input_genotypes -hdf5=$output_hdf5 + + + + + + + + + + + + + + + 10.1093/bioinformatics/btq580 + + \ No newline at end of file diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/brapi-client.jar Binary file cropgeeks_flapjack/lib/brapi-client.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/castor-core-1.4.1.jar Binary file cropgeeks_flapjack/lib/castor-core-1.4.1.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/castor-xml-1.4.1.jar Binary file cropgeeks_flapjack/lib/castor-xml-1.4.1.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/com.fasterxml.jackson.annotations.jar Binary file cropgeeks_flapjack/lib/com.fasterxml.jackson.annotations.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/com.fasterxml.jackson.core.jar Binary file cropgeeks_flapjack/lib/com.fasterxml.jackson.core.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/com.fasterxml.jackson.databind.jar Binary file cropgeeks_flapjack/lib/com.fasterxml.jackson.databind.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/commons-lang3-3.4.jar Binary file cropgeeks_flapjack/lib/commons-lang3-3.4.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/commons-logging-1.1.1.jar Binary file cropgeeks_flapjack/lib/commons-logging-1.1.1.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/converter-jackson-2.1.0.jar Binary file cropgeeks_flapjack/lib/converter-jackson-2.1.0.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/flapjack.jar Binary file cropgeeks_flapjack/lib/flapjack.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/jcommon-1.0.23.jar Binary file cropgeeks_flapjack/lib/jcommon-1.0.23.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/jfreechart-1.0.19.jar Binary file cropgeeks_flapjack/lib/jfreechart-1.0.19.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/okhttp-3.4.2.jar Binary file cropgeeks_flapjack/lib/okhttp-3.4.2.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/okio-1.11.0.jar Binary file cropgeeks_flapjack/lib/okio-1.11.0.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/org.apache.commons.fileupload.jar Binary file cropgeeks_flapjack/lib/org.apache.commons.fileupload.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/osxadapter.jar Binary file cropgeeks_flapjack/lib/osxadapter.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/retrofit-2.1.0.jar Binary file cropgeeks_flapjack/lib/retrofit-2.1.0.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/scri-commons.jar Binary file cropgeeks_flapjack/lib/scri-commons.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/sis-jhdf5-batteries_included.jar Binary file cropgeeks_flapjack/lib/sis-jhdf5-batteries_included.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/sqlite-jdbc-3.7.2.jar Binary file cropgeeks_flapjack/lib/sqlite-jdbc-3.7.2.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/xerces-serializer-2.11.0.jar Binary file cropgeeks_flapjack/lib/xerces-serializer-2.11.0.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/xercesImpl-2.11.0.jar Binary file cropgeeks_flapjack/lib/xercesImpl-2.11.0.jar has changed diff -r 000000000000 -r 830715268b52 cropgeeks_flapjack/lib/xml-apis.jar Binary file cropgeeks_flapjack/lib/xml-apis.jar has changed