Mercurial > repos > crs4 > blat
annotate readme.rst @ 4:5e43533e3ed9 draft
Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
author | crs4 |
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date | Mon, 25 Nov 2013 04:59:52 -0500 |
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children | 34e40c872149 |
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5e43533e3ed9
Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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1 BLAT wrapper |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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2 ============ |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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3 |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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4 Install |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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5 ------- |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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6 |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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7 This BLAT wrapper let you install `BLAT`_ tool dependency automatically. In order to do this, you need to: |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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8 |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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9 - have Galaxy release_2013.11.04 or later; |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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10 - respect BLAT licensing: BLAT source and executables are freely available for academic, nonprofit and personal use. Commercial licensing information is available on the `Kent Informatics website`_. |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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11 |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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12 .. _BLAT: http://genome.ucsc.edu/FAQ/FAQblat.html |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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13 .. _Kent Informatics website: http://www.kentinformatics.com/ |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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14 |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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15 Version history |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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16 --------------- |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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17 |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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18 - Release 1 (blat_wrapper 0.2): Initial release in the Tool Shed. |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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19 - Release 2 (blat_wrapper 0.2): Add version_command element. Add test case from `Joachim Jacob's blat wrapper`_. Add readme section to tool_dependencies.xml . |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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20 - Release 3 (blat_wrapper 0.3): Add the possibility to use locally installed FASTA or 2bit files as database source. |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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21 - Release 4 (blat_wrapper 0.3): Depend on `package_blat_35x1`_ instead of compiling BLAT (requires Galaxy release_2013.11.04 or later). |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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22 |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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23 .. _Joachim Jacob's blat wrapper: http://testtoolshed.g2.bx.psu.edu/view/joachim-jacob/blat |
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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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24 .. _package_blat_35x1: http://toolshed.g2.bx.psu.edu/view/iuc/package_blat_35x1 |