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Correct requirement for blat version 35x1 .
author crs4
date Mon, 24 Feb 2014 06:27:47 -0500
parents 5e43533e3ed9
children
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5e43533e3ed9 Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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1 BLAT wrapper
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2 ============
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4 Install
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5 -------
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7 This BLAT wrapper let you install `BLAT`_ tool dependency automatically. In order to do this, you need to:
5e43533e3ed9 Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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9 - have Galaxy release_2013.11.04 or later;
5e43533e3ed9 Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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10 - respect BLAT licensing: BLAT source and executables are freely available for academic, nonprofit and personal use. Commercial licensing information is available on the `Kent Informatics website`_.
5e43533e3ed9 Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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12 .. _BLAT: http://genome.ucsc.edu/FAQ/FAQblat.html
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13 .. _Kent Informatics website: http://www.kentinformatics.com/
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15 Version history
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16 ---------------
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34e40c872149 Correct requirement for blat version 35x1 .
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18 - Release 5 (blat_wrapper 0.3): Correct requirement for blat version 35x1 .
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5e43533e3ed9 Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
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19 - Release 4 (blat_wrapper 0.3): Depend on `package_blat_35x1`_ instead of compiling BLAT (requires Galaxy release_2013.11.04 or later).
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20 - Release 3 (blat_wrapper 0.3): Use column number for installed database sorting.
34e40c872149 Correct requirement for blat version 35x1 .
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21 - Release 2 (blat_wrapper 0.3): Add the possibility to use locally installed FASTA or 2bit files as database source.
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22 - Release 1 (blat_wrapper 0.2): Add version_command element. Add test case from `Joachim Jacob's blat wrapper`_. Add readme section to tool_dependencies.xml .
34e40c872149 Correct requirement for blat version 35x1 .
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23 - Release 0 (blat_wrapper 0.2): Initial release in the Tool Shed.
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25 .. _Joachim Jacob's blat wrapper: http://testtoolshed.g2.bx.psu.edu/view/joachim-jacob/blat
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26 .. _package_blat_35x1: http://toolshed.g2.bx.psu.edu/view/iuc/package_blat_35x1
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34e40c872149 Correct requirement for blat version 35x1 .
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28 Development
34e40c872149 Correct requirement for blat version 35x1 .
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29 -----------
34e40c872149 Correct requirement for blat version 35x1 .
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34e40c872149 Correct requirement for blat version 35x1 .
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31 Development is hosted at https://bitbucket.org/crs4/orione-tools . Contributions and bug reports are very welcome!