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Use package_blat_35x1 in tool_dependencies.xml. Add readme.rst .
author crs4
date Mon, 25 Nov 2013 04:59:52 -0500
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children 34e40c872149
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3:d78b8fe7ca83 4:5e43533e3ed9
1 BLAT wrapper
2 ============
3
4 Install
5 -------
6
7 This BLAT wrapper let you install `BLAT`_ tool dependency automatically. In order to do this, you need to:
8
9 - have Galaxy release_2013.11.04 or later;
10 - respect BLAT licensing: BLAT source and executables are freely available for academic, nonprofit and personal use. Commercial licensing information is available on the `Kent Informatics website`_.
11
12 .. _BLAT: http://genome.ucsc.edu/FAQ/FAQblat.html
13 .. _Kent Informatics website: http://www.kentinformatics.com/
14
15 Version history
16 ---------------
17
18 - Release 1 (blat_wrapper 0.2): Initial release in the Tool Shed.
19 - Release 2 (blat_wrapper 0.2): Add version_command element. Add test case from `Joachim Jacob's blat wrapper`_. Add readme section to tool_dependencies.xml .
20 - Release 3 (blat_wrapper 0.3): Add the possibility to use locally installed FASTA or 2bit files as database source.
21 - Release 4 (blat_wrapper 0.3): Depend on `package_blat_35x1`_ instead of compiling BLAT (requires Galaxy release_2013.11.04 or later).
22
23 .. _Joachim Jacob's blat wrapper: http://testtoolshed.g2.bx.psu.edu/view/joachim-jacob/blat
24 .. _package_blat_35x1: http://toolshed.g2.bx.psu.edu/view/iuc/package_blat_35x1