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comparison blat_wrapper.xml @ 3:d78b8fe7ca83 draft

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Use column number for installed database sorting.
author crs4
date Mon, 04 Nov 2013 09:06:48 -0500
parents 6265acc179ff
children 34e40c872149
comparison
equal deleted inserted replaced
2:6265acc179ff 3:d78b8fe7ca83
86 <option value="file">FASTA or 2bit file from your history</option> 86 <option value="file">FASTA or 2bit file from your history</option>
87 </param> 87 </param>
88 <when value="fasta_db"> 88 <when value="fasta_db">
89 <param name="database" type="select" label="Select a FASTA database"> 89 <param name="database" type="select" label="Select a FASTA database">
90 <options from_data_table="all_fasta"> 90 <options from_data_table="all_fasta">
91 <filter type="sort_by" column="name" /> 91 <filter type="sort_by" column="2" />
92 <validator type="no_options" message="No FASTA database available" /> 92 <validator type="no_options" message="No FASTA database available" />
93 </options> 93 </options>
94 </param> 94 </param>
95 </when> 95 </when>
96 <when value="twobit_db"> 96 <when value="twobit_db">
97 <param name="database" type="select" label="Select a 2bit database"> 97 <param name="database" type="select" label="Select a 2bit database">
98 <options from_data_table="lastz_seqs"> 98 <options from_data_table="lastz_seqs">
99 <filter type="sort_by" column="name" /> 99 <filter type="sort_by" column="1" />
100 <validator type="no_options" message="No 2bit database available" /> 100 <validator type="no_options" message="No 2bit database available" />
101 </options> 101 </options>
102 </param> 102 </param>
103 <param name="range" type="text" optional="true" value="" label="Restrict the search space to this genomic range in the sequence database" help="Format = 'chr1:250000-260000' (i.e. name:startposition-endposition)"> 103 <param name="range" type="text" optional="true" value="" label="Restrict the search space to this genomic range in the sequence database" help="Format = 'chr1:250000-260000' (i.e. name:startposition-endposition)">
104 <validator type="regex" message="Invalid range">\w+:\d+-\d+</validator> 104 <validator type="regex" message="Invalid range">\w+:\d+-\d+</validator>