Mercurial > repos > crs4 > blat
view tool_dependencies.xml @ 2:6265acc179ff draft
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author | crs4 |
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date | Mon, 04 Nov 2013 06:35:53 -0500 |
parents | c4ad58c4bc7d |
children | 5e43533e3ed9 |
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<?xml version="1.0"?> <tool_dependency> <package name="blat" version="35"> <!-- <repository name="package_blat_35x1" owner="iuc" /> This may be used instead of everything inside <install> when a stable Galaxy release will support the 'download_binary' action type --> <install version="1.0"> <actions> <action type="download_by_url" target_filename="blatSrc.zip">http://hgwdev.cse.ucsc.edu/~kent/src/blatSrc35.zip</action> <action type="shell_command">export MACHTYPE=`uname -m` && export HOME=$INSTALL_DIR && mkdir -p $HOME/bin/$MACHTYPE && make</action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/`uname -m`</environment_variable> </action> </actions> </install> <readme> BLAT sequence aligner from the UCSC: http://genome.ucsc.edu/FAQ/FAQblat.html Git development repository: http://genome-source.cse.ucsc.edu/gitweb/?p=kent.git Please note that the BLAT source and executables are freely available for academic, nonprofit and personal use. Commercial licensing information is available on the Kent Informatics website (http://www.kentinformatics.com/). </readme> </package> </tool_dependency>