Mercurial > repos > crs4 > blat
changeset 5:34e40c872149 draft default tip
Correct requirement for blat version 35x1 .
| author | crs4 |
|---|---|
| date | Mon, 24 Feb 2014 06:27:47 -0500 |
| parents | 5e43533e3ed9 |
| children | |
| files | COPYING blat_wrapper.xml readme.rst tool_dependencies.xml |
| diffstat | 4 files changed, 14 insertions(+), 7 deletions(-) [+] |
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--- a/COPYING Mon Nov 25 04:59:52 2013 -0500 +++ b/COPYING Mon Feb 24 06:27:47 2014 -0500 @@ -1,4 +1,4 @@ -Copyright © 2013 CRS4 Srl. http://www.crs4.it/ +Copyright © 2013-2014 CRS4 Srl. http://www.crs4.it/ Created by: Andrea Pinna <andrea.pinna@crs4.it> Nicola Soranzo <nicola.soranzo@crs4.it>
--- a/blat_wrapper.xml Mon Nov 25 04:59:52 2013 -0500 +++ b/blat_wrapper.xml Mon Feb 24 06:27:47 2014 -0500 @@ -1,7 +1,7 @@ <tool id="blat_wrapper" name="BLAT" version="0.3"> <description></description> <requirements> - <requirement type="package" version="35">blat</requirement> + <requirement type="package" version="35x1">blat</requirement> </requirements> <version_command>blat|head -n 1</version_command> <command>
--- a/readme.rst Mon Nov 25 04:59:52 2013 -0500 +++ b/readme.rst Mon Feb 24 06:27:47 2014 -0500 @@ -15,10 +15,17 @@ Version history --------------- -- Release 1 (blat_wrapper 0.2): Initial release in the Tool Shed. -- Release 2 (blat_wrapper 0.2): Add version_command element. Add test case from `Joachim Jacob's blat wrapper`_. Add readme section to tool_dependencies.xml . -- Release 3 (blat_wrapper 0.3): Add the possibility to use locally installed FASTA or 2bit files as database source. +- Release 5 (blat_wrapper 0.3): Correct requirement for blat version 35x1 . - Release 4 (blat_wrapper 0.3): Depend on `package_blat_35x1`_ instead of compiling BLAT (requires Galaxy release_2013.11.04 or later). +- Release 3 (blat_wrapper 0.3): Use column number for installed database sorting. +- Release 2 (blat_wrapper 0.3): Add the possibility to use locally installed FASTA or 2bit files as database source. +- Release 1 (blat_wrapper 0.2): Add version_command element. Add test case from `Joachim Jacob's blat wrapper`_. Add readme section to tool_dependencies.xml . +- Release 0 (blat_wrapper 0.2): Initial release in the Tool Shed. .. _Joachim Jacob's blat wrapper: http://testtoolshed.g2.bx.psu.edu/view/joachim-jacob/blat .. _package_blat_35x1: http://toolshed.g2.bx.psu.edu/view/iuc/package_blat_35x1 + +Development +----------- + +Development is hosted at https://bitbucket.org/crs4/orione-tools . Contributions and bug reports are very welcome!
--- a/tool_dependencies.xml Mon Nov 25 04:59:52 2013 -0500 +++ b/tool_dependencies.xml Mon Feb 24 06:27:47 2014 -0500 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="blat" version="35"> - <repository changeset_revision="84c54f1fa280" name="package_blat_35x1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> + <package name="blat" version="35x1"> + <repository changeset_revision="cc0f4b49b6f1" name="package_blat_35x1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency>