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Rewrite of param handling. interPairEnd param moved to "paired" section. Add param for '-a' option. Remove basic parallelism tag, which does not work with multiple inputs (thanks Bjoern Gruening for the notice). Simplify Python code.
author crs4
date Fri, 21 Mar 2014 12:56:15 -0400
parents 6820983ba5d5
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<?xml version="1.0"?>
<tool_dependency>
    <package name="bwa" version="0.7.7">
        <repository changeset_revision="def70e393020" name="package_bwa_0_7_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package>
</tool_dependency>