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comparison readme.rst @ 2:bad8a51514dd draft

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Directly call edge.pl, remove edge_pro.py . Move minimun and maximum insert size params to paired library section. Update Orione citation.
author crs4
date Wed, 05 Mar 2014 06:44:35 -0500
parents f77ce4f92b46
children ddcbf8732706
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1:f77ce4f92b46 2:bad8a51514dd
9 .. _Switch: http://search.cpan.org/~rgarcia/Switch/Switch.pm 9 .. _Switch: http://search.cpan.org/~rgarcia/Switch/Switch.pm
10 10
11 Configuration 11 Configuration
12 ------------- 12 -------------
13 13
14 EDGE-pro tool may be configured to use more than one CPU core by selecting an appropriate destination for this tool in Galaxy job_conf.xml file (see http://wiki.galaxyproject.org/Admin/Config/Jobs and http://wiki.galaxyproject.org/Admin/Config/Performance/Cluster ). 14 edge_pro tool may be configured to use more than one CPU core by selecting an appropriate destination for this tool in Galaxy job_conf.xml file (see https://wiki.galaxyproject.org/Admin/Config/Jobs and https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster ).
15 15
16 If you are using Galaxy release_2013.11.04 or later, this tool will automatically use the number of CPU cores allocated by the job runner according to the configuration of the destination selected for this tool. 16 If you are using Galaxy release_2013.11.04 or later, this tool will automatically use the number of CPU cores allocated by the job runner according to the configuration of the destination selected for this tool.
17 17
18 If instead you are using an older Galaxy release, you should also add a line 18 If instead you are using an older Galaxy release, you should also add a line
19 19
24 <tool_dependencies_dir>/edge-pro/1.3.1/crs4/edge_pro/<hash_string>/env.sh 24 <tool_dependencies_dir>/edge-pro/1.3.1/crs4/edge_pro/<hash_string>/env.sh
25 25
26 Version history 26 Version history
27 --------------- 27 ---------------
28 28
29 - Release 2: Directly call edge.pl, remove edge_pro.py . Move minimun and maximum insert size params to paired library section. Update Orione citation.
29 - Release 1: Use $GALAXY_SLOTS instead of $EDGE_PRO_SITE_OPTIONS. Add dependency on bowtie2. Add readme.rst . 30 - Release 1: Use $GALAXY_SLOTS instead of $EDGE_PRO_SITE_OPTIONS. Add dependency on bowtie2. Add readme.rst .
30 - Release 0: Initial release in the Tool Shed. 31 - Release 0: Initial release in the Tool Shed.
31 32
32 Development 33 Development
33 ----------- 34 -----------