Mercurial > repos > crs4 > edge_pro

comparison readme.rst @ 1:f77ce4f92b46 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Use $GALAXY_SLOTS instead of $EDGE_PRO_SITE_OPTIONS. Add dependency on bowtie2. Add readme.rst .
author crs4
date Fri, 31 Jan 2014 05:44:03 -0500
parents
children bad8a51514dd
comparison
equal deleted inserted replaced
0:7af33315bc5e 1:f77ce4f92b46
1 EDGE-pro wrapper
2 ================
3
4 Dependencies of EDGE-pro which need to be installed separetely
5 --------------------------------------------------------------
6
7 - Switch_ Perl module.
8
9 .. _Switch: http://search.cpan.org/~rgarcia/Switch/Switch.pm
10
11 Configuration
12 -------------
13
14 EDGE-pro tool may be configured to use more than one CPU core by selecting an appropriate destination for this tool in Galaxy job_conf.xml file (see http://wiki.galaxyproject.org/Admin/Config/Jobs and http://wiki.galaxyproject.org/Admin/Config/Performance/Cluster ).
15
16 If you are using Galaxy release_2013.11.04 or later, this tool will automatically use the number of CPU cores allocated by the job runner according to the configuration of the destination selected for this tool.
17
18 If instead you are using an older Galaxy release, you should also add a line
19
20 GALAXY_SLOTS=N; export GALAXY_SLOTS
21
22 (where N is the number of CPU cores allocated by the job runner for this tool) to the file
23
24 <tool_dependencies_dir>/edge-pro/1.3.1/crs4/edge_pro/<hash_string>/env.sh
25
26 Version history
27 ---------------
28
29 - Release 1: Use $GALAXY_SLOTS instead of $EDGE_PRO_SITE_OPTIONS. Add dependency on bowtie2. Add readme.rst .
30 - Release 0: Initial release in the Tool Shed.
31
32 Development
33 -----------
34
35 Development is hosted at https://bitbucket.org/crs4/orione-tools . Contributions and bug reports are very welcome!