Mercurial > repos > crs4 > hadoop_galaxy
comparison make_pathset.xml @ 0:7698311d4466 draft
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| author | crs4 |
|---|---|
| date | Fri, 30 May 2014 06:48:47 -0400 |
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| -1:000000000000 | 0:7698311d4466 |
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| 1 <tool id="hadoop_galaxy_make_pathset" name="Make Pathset" version="0.1.0"> | |
| 2 <description>Create a pathset for a set of files</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="0.11">pydoop</requirement> | |
| 5 <requirement type="package" version="0.1.1">hadoop-galaxy</requirement> | |
| 6 </requirements> | |
| 7 | |
| 8 <command> | |
| 9 make_pathset | |
| 10 #if str($paths.source) == 'tool_input' | |
| 11 --force-local --data-format $paths.datapaths.ext "$output_path" "$paths.datapaths" | |
| 12 #elif str($paths.source) == 'text_box' | |
| 13 #if str($paths.filesystem_select) == "local_fs" | |
| 14 --force-local | |
| 15 #end if | |
| 16 #if $paths.data_format | |
| 17 --data-format "$paths.data_format" | |
| 18 #end if | |
| 19 "$output_path" "$paths.datapaths" | |
| 20 #else | |
| 21 #raise ValueError("BUG!! unknown paths.source value") | |
| 22 #end if | |
| 23 </command> | |
| 24 | |
| 25 <inputs> | |
| 26 <conditional name="paths"> | |
| 27 <param name="source" type="select" label="Path source"> | |
| 28 <option value="tool_input">Dataset from your history</option> | |
| 29 <option value="text_box">User input</option> | |
| 30 </param> | |
| 31 <when value="tool_input"> | |
| 32 <param name="datapaths" type="data" label="A dataset in any format" /> | |
| 33 </when> | |
| 34 <when value="text_box"> | |
| 35 <param name="filesystem_select" type="select" label="File system type"> | |
| 36 <option value="default_fs">Default</option> | |
| 37 <option value="local_fs">Local FS</option> | |
| 38 </param> | |
| 39 <param name="datapaths" type="text" label="Paths or URIs" size="60"> | |
| 40 <validator type="empty_field" /> | |
| 41 </param> | |
| 42 <param name="data_format" type="text" label="Extension representing data format" size="20" /> | |
| 43 </when> | |
| 44 </conditional> | |
| 45 </inputs> | |
| 46 | |
| 47 <outputs> | |
| 48 <data name="output_path" format="pathset" /> | |
| 49 </outputs> | |
| 50 | |
| 51 <stdio> | |
| 52 <exit_code range="1:" level="fatal" /> | |
| 53 </stdio> | |
| 54 | |
| 55 <help> | |
| 56 Create a pathset for a set of files to be used as input for Hadoop tools. | |
| 57 </help> | |
| 58 </tool> |