Mercurial > repos > crs4 > kggseq_variant_selection
view examples/rare.disease.hg19.vcf @ 4:a13b8ff61c6c draft
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| author | crs4 |
|---|---|
| date | Thu, 04 Aug 2016 04:40:06 -0400 |
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##fileformat=VCFv4.0 ##FILTER=<ID=LowQual,Description="Low quality"> ##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed"> ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth (only filtered reads used for calling)"> ##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=PL,Number=3,Type=Float,Description="Normalized, Phred-scaled likelihoods for AA,AB,BB genotypes where A=ref and B=alt; not applicable if site is not biallelic"> ##INFO=<ID=AC,Number=.,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed"> ##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed"> ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> ##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership"> ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> ##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?"> ##INFO=<ID=Dels,Number=1,Type=Float,Description="Fraction of Reads Containing Spanning Deletions"> ##INFO=<ID=HRun,Number=1,Type=Integer,Description="Largest Contiguous Homopolymer Run of Variant Allele In Either Direction"> ##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with two (and only two) segregating haplotypes"> ##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality"> ##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads"> ##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth"> ##INFO=<ID=SB,Number=1,Type=Float,Description="Strand Bias"> ##SelectVariants="analysis_type=SelectVariants input_file=[] sample_metadata=[] read_buffer_size=null phone_home=STANDARD read_filter=[] intervals=null excludeIntervals=null reference_sequence=/software/sequencing/GenomeAnalysisTK-1.0.5506/Homo_sapiens_assembly18.fasta rodBind=[/home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr1.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr2.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr3.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr4.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr5.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr6.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr7.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr8.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr9.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr10.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr11.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr12.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr13.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr14.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr15.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr16.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr17.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr18.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr19.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr20.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr21.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chr22.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chrX.vcf, /home/limx/myprojects/hbvexon/gatk/SNP/mergedsnps_chrY.vcf] rodToIntervalTrackName=null BTI_merge_rule=UNION nonDeterministicRandomSeed=false DBSNP=null downsampling_type=null downsample_to_fraction=null downsample_to_coverage=null baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=1 interval_merging=ALL read_group_black_list=null processingTracker=null restartProcessingTracker=false processingTrackerStatusFile=null processingTrackerID=-1 allow_intervals_with_unindexed_bam=false disable_experimental_low_memory_sharding=false logging_level=INFO log_to_file=null help=false out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sample=[A, B, C] select_expressions=[] excludeNonVariants=true excludeFiltered=true discordance= concordance= family_structure= mendelianViolation=false mendelianViolationQualThreshold=0.0 select_random_number=0 select_random_fraction=0.0 selectSNPs=false selectIndels=false" ##source=SelectVariants #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT X Y Z chr7 128585998 . G A 108669.53 PASS AC=4;AF=0.67;AN=6;DB;DP=121;DS;Dels=0.00;HRun=0;HaplotypeScore=2.5150;MQ=70.14;MQ0=0;QD=24.60;SB=-48638.68;sumGLbyD=23.39 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,450 0/0:34,0:31:99:0,420,450 0/0:34,0:31:99:0,420,450 chr8 17797224 . C T 148.26 PASS AC=2;AF=0.33;AN=6;DP=94;DS;Dels=0.00;HRun=0;HaplotypeScore=2.1006;MQ=61.63;MQ0=23;QD=1.88;SB=-20;sumGLbyD=2.76 GT:AD:DP:GQ:PL 0/1:25,12:31:99:158,0,707 0/0:26,1:23:99:60,0,604 0/1:36,25:50:99:60,0,1061 chr8 17827193 . A G 148.26 PASS AC=2;AF=0.33;AN=6;DP=94;DS;Dels=0.00;HRun=0;HaplotypeScore=2.1006;MQ=61.63;MQ0=23;QD=1.88;SB=-20;sumGLbyD=2.76 GT:AD:DP:GQ:PL 0/1:25,12:31:99:158,0,707 0/1:26,20:43:99:60,0,604 0/0:36,1:40:99:60,0,1061 chr5 289676 . G A 148.26 PASS AC=2;AF=0.33;AN=6;DP=94;DS;Dels=0.00;HRun=0;HaplotypeScore=2.1006;MQ=61.63;MQ0=23;QD=1.88;SB=36.29;sumGLbyD=2.76 GT:AD:DP:GQ:PL 0/1:25,12:31:99:158,0,707 0/0:26,3:23:0.20:13,0,604 0/1:36,5:40:60.05:60,0,1061 chr10 126683190 . C A 1993.22 PASS AC=3;AF=0.50;AN=6;DP=88;DS;Dels=0.00;HRun=1;HaplotypeScore=2.4857;MQ=61.23;MQ0=9;QD=6.19;SB=-842.56;sumGLbyD=6.79 GT:AD:DP:GQ:PL 1/1:1,23:25:99:264,0,474 0/1:11,16:23:99:391,0,255 0/1:22,20:40:99:507,0,631 chr10 126691634 . T A 931.47 PASS AC=3;AF=0.50;AN=6;DP=110;DS;Dels=0.00;HRun=1;HaplotypeScore=1.7539;MQ=69.65;MQ0=0;QD=7.39;SB=-210.91;sumGLbyD=8.09 GT:AD:DP:GQ:PL 0/1:17,17:29:99:395,0,424 0/1:30,14:39:99:261,0,848 0/1:29,18:42:99:365,0,853 chr21 34572771 rs12626779 T A 147.49 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=116.29;MQ0=0;QD=24.58;SB=-79.53;sumGLbyD=37.57 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:35,3,0 1/1:0,1:1:3.01:35,3,0 ./. chr21 34576385 rs928738 G A 127.10 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=2;HaplotypeScore=0.1570;MQ=85.40;MQ0=0;QD=21.18;SB=-52.51;sumGLbyD=32.85 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:38,3,0 ./. chr21 34576875 . G T 212.78 PASS AC=2;AF=0.50;AN=4;DP=3;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=133.83;MQ0=0;QD=26.60;SB=-118.28;sumGLbyD=35.61 GT:AD:DP:GQ:PL ./. 0/0:1,0:1:3.01:0,3,39 1/1:0,2:2:6.02:68,6,0 chr21 34576902 . C A 89.03 PASS AC=1;AF=0.25;AN=4;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.2745;MQ=129.48;MQ0=0;QD=17.81;SB=-23.76;sumGLbyD=28.63 GT:AD:DP:GQ:PL ./. 0/1:0,1:1:1.76:34,3,0 0/0:2,0:2:6.02:0,6,69 chr21 34577387 rs12626953 A G 216.55 PASS AC=4;AF=1.00;AN=4;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.1677;MQ=98.24;MQ0=0;QD=12.74;SB=-104.85;sumGLbyD=17.70 GT:AD:DP:GQ:PL 1/1:0,2:2:3.01:45,3,0 1/1:0,1:1:3.01:30,3,0 ./. chr21 34577411 rs4491797 T C 205.18 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=2;HaplotypeScore=0.0293;MQ=83.65;MQ0=0;QD=14.66;SB=-38.86;sumGLbyD=20.13 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:38,3,0 0/0:1,0:1:3.01:0,3,38 ./. chr21 34577426 rs12626965 A C 142.72 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=3;HaplotypeScore=0.0000;MQ=85.88;MQ0=0;QD=15.86;SB=-50.38;sumGLbyD=23.97 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:37,3,0 0/0:1,0:1:3.01:0,3,35 ./. chr21 34577551 rs4624469 C T 99.91 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.03;HRun=5;HaplotypeScore=0.9021;MQ=60.04;MQ0=0;QD=11.10;SB=-26.55;sumGLbyD=20.49 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:34,3,0 chr21 34577557 . C T 69.14 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=5;HaplotypeScore=0.5332;MQ=58.87;MQ0=0;QD=9.88;SB=-41.81;sumGLbyD=22.51 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:33,3,0 chr21 34577565 . C T 60.22 PASS AC=1;AF=0.50;AN=2;DP=1;Dels=0.00;HRun=20;HaplotypeScore=1.1131;MQ=58.17;MQ0=0;QD=8.60;SB=-40.12;sumGLbyD=19.84 GT:AD:DP:GQ:PL ./. ./. 0/1:0,1:1:1.76:32,3,0 chr21 34577967 rs2834141 C G 55.99 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0986;MQ=123.63;MQ0=0;QD=18.66;SB=-28.62;sumGLbyD=37.83 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:37,3,0 ./. 0/0:1,0:1:3.01:0,3,33 chr21 34578113 . G C 312.22 PASS AC=4;AF=1.00;AN=4;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0552;MQ=86.18;MQ0=0;QD=22.30;SB=-120.45;sumGLbyD=29.53 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:36,3,0 1/1:0,1:1:3.01:35,3,0 chr21 34578121 rs2834142 T C 390.43 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0782;MQ=81.88;MQ0=0;QD=21.69;SB=-121.50;sumGLbyD=27.52 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:37,3,0 1/1:0,1:1:3.01:38,3,0 chr21 34578154 rs9983081 G C 656.01 PASS AC=4;AF=1.00;AN=4;DB;DP=3;Dels=0.00;HRun=1;HaplotypeScore=0.0293;MQ=93.51;MQ0=0;QD=27.33;SB=-335.08;sumGLbyD=31.11 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:39,3,0 1/1:0,2:2:6.02:75,6,0 chr21 34579241 . C T 199.26 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=83.79;MQ0=0;QD=22.14;SB=-112.23;sumGLbyD=30.58 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:36,3,0 chr21 34580069 rs2834144 A C 340.66 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0321;MQ=75.85;MQ0=0;QD=22.71;SB=-159.35;sumGLbyD=29.53 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:39,3,0 ./. ./. chr21 34580334 . G A 95.15 PASS AC=1;AF=0.50;AN=2;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0863;MQ=95.59;MQ0=0;QD=13.59;SB=-15.19;sumGLbyD=24.75 GT:AD:DP:GQ:PL 0/1:1,1:2:26.48:26,0,31 ./. ./. chr21 34580435 . G A 153.82 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=2;HaplotypeScore=0.0000;MQ=83.19;MQ0=0;QD=19.23;SB=-89.75;sumGLbyD=28.93 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:35,3,0 ./. ./. chr21 34580466 . A T 126.61 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=3;HaplotypeScore=0.0391;MQ=85.25;MQ0=0;QD=15.83;SB=-58.24;sumGLbyD=24.97 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:31,3,0 ./. ./. chr21 34580474 rs2032101 T C 161.18 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0469;MQ=88.27;MQ0=0;QD=20.15;SB=-64.18;sumGLbyD=28.69 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:38,3,0 ./. ./. chr21 34580600 rs4374450 C T 58.53 PASS AC=4;AF=1.00;AN=4;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.1249;MQ=136.54;MQ0=0;QD=14.63;SB=-22.98;sumGLbyD=29.22 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:34,3,0 1/1:0,2:2:3.01:45,3,0 ./. chr21 34580726 rs2032102 G A 268.47 PASS AC=3;AF=0.75;AN=4;DB;DP=5;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=129.78;MQ0=0;QD=20.65;SB=-133.44;sumGLbyD=27.01 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:74,6,0 ./. 0/1:1,2:3:29.55:61,0,30 chr21 34580781 rs2186276 T C 162.63 PASS AC=1;AF=0.50;AN=2;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.1108;MQ=132.23;MQ0=0;QD=20.33;SB=-59.19;sumGLbyD=28.53 GT:AD:DP:GQ:PL ./. ./. 0/1:2,1:3:27.95:28,0,63 chr21 34581201 rs2154582 G A 60.76 PASS AC=1;AF=0.50;AN=2;DB;DP=1;Dels=0.00;HRun=2;HaplotypeScore=0.0000;MQ=105.90;MQ0=0;QD=20.25;SB=-24.86;sumGLbyD=39.42 GT:AD:DP:GQ:PL ./. 0/1:0,1:1:1.76:34,3,0 ./. chr21 34581544 . T C 73.45 PASS AC=1;AF=0.50;AN=2;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.3155;MQ=94.43;MQ0=0;QD=24.48;SB=-34.23;sumGLbyD=42.18 GT:AD:DP:GQ:PL 0/1:0,1:1:1.76:38,3,0 ./. ./. chr21 34581696 . A G 170.68 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=94.43;MQ0=0;QD=28.45;SB=-21.72;sumGLbyD=39.03 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:39,3,0 ./. chr21 34581737 . A C 68.92 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.2217;MQ=125.63;MQ0=0;QD=17.23;SB=-29.58;sumGLbyD=27.11 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:38,3,0 ./. chr21 34584013 rs2834148 T C 247.43 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=98.45;MQ0=0;QD=30.93;SB=-64.46;sumGLbyD=39.20 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:39,3,0 chr21 34584513 rs2834150 A G 368.22 PASS AC=2;AF=1.00;AN=2;DB;DP=4;Dels=0.00;HRun=0;HaplotypeScore=0.1128;MQ=116.29;MQ0=0;QD=23.01;SB=-209.78;sumGLbyD=28.80 GT:AD:DP:GQ:PL 1/1:0,4:4:6.02:89,6,0 ./. ./. chr21 34584544 rs11088242 T C 473.95 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=2;HaplotypeScore=0.0313;MQ=93.99;MQ0=0;QD=26.33;SB=-194.34;sumGLbyD=31.50 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:76,6,0 ./. ./. chr21 34584851 rs2834151 T C 105.28 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0276;MQ=76.89;MQ0=0;QD=17.55;SB=-53.17;sumGLbyD=29.79 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:34,3,0 ./. chr21 34585078 rs11088243 G A 531.48 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=2;HaplotypeScore=0.1392;MQ=84.14;MQ0=0;QD=25.31;SB=-306.72;sumGLbyD=31.50 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:39,3,0 1/1:0,1:1:3.01:37,3,0 chr21 34586183 rs10775652 C T 264.28 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0813;MQ=105.90;MQ0=0;QD=26.43;SB=-116.46;sumGLbyD=34.21 GT:AD:DP:GQ:PL ./. ./. 1/1:0,2:2:6.02:71,6,0 chr21 34593122 rs2186277 T C 413.13 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=84.75;MQ0=0;QD=25.82;SB=-192.36;sumGLbyD=30.42 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:38,3,0 ./. ./. chr21 34593150 rs2186278 T G 214.56 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=87.53;MQ0=0;QD=23.84;SB=-137.71;sumGLbyD=32.31 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:39,3,0 ./. ./. chr21 34593710 rs62226132 T A 82 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=104.26;MQ0=0;QD=20.50;SB=-13.77;sumGLbyD=35.87 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:36,3,0 ./. ./. chr21 34599084 rs4553897 G A 145.14 PASS AC=2;AF=0.50;AN=4;DB;DP=4;Dels=0.00;HRun=0;HaplotypeScore=0.2828;MQ=93.74;MQ0=0;QD=24.19;SB=-23.06;sumGLbyD=37.48 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:33,3,0 0/0:3,0:3:9.03:0,9,106 chr21 34603880 rs2248202 C A 146.56 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=117.27;MQ0=0;QD=29.31;SB=-73.35;sumGLbyD=39.31 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:36,3,0 ./. chr21 34607223 rs6517152 A G 351.46 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=87.53;MQ0=0;QD=27.04;SB=-64.35;sumGLbyD=32.98 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:37,3,0 ./. ./. chr21 34607870 rs17860142 C G 118.34 PASS AC=4;AF=0.67;AN=6;DB;DP=3;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=129.05;MQ0=0;QD=16.91;SB=-87.77;sumGLbyD=26.86 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:36,3,0 1/1:0,1:1:3.01:35,3,0 0/0:1,0:1:3.01:0,3,37 chr21 34609505 rs3153 G A 124.22 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0521;MQ=115.29;MQ0=0;QD=24.84;SB=5.40;sumGLbyD=38.58 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,37 1/1:0,1:1:3.01:34,3,0 ./. chr21 34609596 rs1137779 T G 443.67 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=4;HaplotypeScore=0.1558;MQ=80.96;MQ0=0;QD=26.10;SB=-220.52;sumGLbyD=30.91 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:36,3,0 ./. chr21 34614250 rs2229207 T C 32967.23 PASS AC=1;AF=0.17;AN=6;DB;DP=150;DS;Dels=0.00;HRun=1;HaplotypeScore=9.0304;MQ=71.75;MQ0=1;QD=19.74;SB=-15470.38;sumGLbyD=17.32 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,147,1769 0/1:30,20:50:99:578,0,901 0/0:50,0:50:99:0,147,1783 chr21 34614255 rs1051393 T G 111356.50 PASS AC=3;AF=0.50;AN=6;DB;DP=150;DS;Dels=0.00;HRun=0;HaplotypeScore=8.4347;MQ=71.79;MQ0=1;QD=25.25;SB=-53007.75;sumGLbyD=23.74 GT:AD:DP:GQ:PL 0/1:22,28:50:99:766,0,644 1/1:0,50:50:99:1678,144,0 0/0:50,0:50:99:0,150,1851 chr21 34615250 rs7275213 T C 275.44 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=89.77;MQ0=1;QD=27.54;SB=-96.07;sumGLbyD=32.80 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:36,3,0 ./. chr21 34616545 rs2834157 A G 870.10 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.4941;MQ=74.06;MQ0=0;QD=30.00;SB=-160.10;sumGLbyD=36.57 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:37,3,0 0/0:1,0:1:3.01:0,3,36 ./. chr21 34616549 rs17860183 A T 331.17 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.02;HRun=1;HaplotypeScore=0.3999;MQ=74.06;MQ0=0;QD=25.47;SB=-62.05;sumGLbyD=37.04 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:37,3,0 0/0:1,0:1:3.01:0,3,35 ./. chr21 34616923 rs2236756 C A 3133.88 PASS AC=2;AF=0.50;AN=4;DB;DP=3;Dels=0.00;HRun=1;HaplotypeScore=0.4314;MQ=60.11;MQ0=0;QD=18.54;SB=-285.90;sumGLbyD=21.10 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,35 ./. 1/1:0,2:2:6.01:63,6,0 chr21 34617213 rs2834158 T C 64755.41 PASS AC=3;AF=0.50;AN=6;DB;DP=150;DS;Dels=0.00;HRun=1;HaplotypeScore=2.8201;MQ=73.56;MQ0=0;QD=22.07;SB=-13155.38;sumGLbyD=20.18 GT:AD:DP:GQ:PL 0/1:32,18:50:99:511,0,984 0/0:50,0:50:99:0,150,1870 1/1:0,50:50:99:1847,150,0 chr21 34617457 . C G 6314.86 PASS AC=1;AF=0.17;AN=6;DP=86;DS;Dels=0.00;HRun=0;HaplotypeScore=0.7204;MQ=74.18;MQ0=0;QD=19.08;SB=-640.04;sumGLbyD=16.08 GT:AD:DP:GQ:PL 0/0:31,0:30:90.28:0,90,1122 0/0:22,0:22:66.20:0,66,805 0/1:18,16:34:99:479,0,578 chr21 34618043 rs2284549 A T 284.77 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.1173;MQ=78.89;MQ0=0;QD=25.89;SB=-44.95;sumGLbyD=33.23 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:36,3,0 chr21 34618285 rs2284550 G A 172.05 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=2;HaplotypeScore=0.0235;MQ=85.06;MQ0=0;QD=21.51;SB=-77.71;sumGLbyD=34.15 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,36 ./. 1/1:0,1:1:3.01:36,3,0 chr21 34618313 rs2284551 A G 258.33 PASS AC=1;AF=0.25;AN=4;DB;DP=2;Dels=0.00;HRun=2;HaplotypeScore=0.0571;MQ=81.37;MQ0=0;QD=25.83;SB=-123.93;sumGLbyD=36.88 GT:AD:DP:GQ:PL 0/0:1,0:1:3:0,3,28 ./. 0/1:0,1:1:1.76:38,3,0 chr21 34619445 rs2073361 A G 5312.03 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.2238;MQ=58.76;MQ0=0;QD=24.15;SB=-311.96;sumGLbyD=22.55 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:32,3,0 chr21 34622536 rs2834165 A G 165.54 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=117.27;MQ0=0;QD=20.69;SB=-49.52;sumGLbyD=28.88 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:39,3,0 0/0:1,0:1:3.01:0,3,36 ./. chr21 34624917 rs2236757 A G 56630.22 PASS AC=3;AF=0.50;AN=6;DB;DP=62;DS;Dels=0.00;HRun=0;HaplotypeScore=1.0913;MQ=67.50;MQ0=0;QD=24.52;SB=-7444.89;sumGLbyD=22.59 GT:AD:DP:GQ:PL 0/1:10,11:20:99:314,0,293 0/0:14,0:14:42.12:0,42,485 1/1:0,28:28:78.25:994,78,0 chr21 34625413 rs2236758 A G 4451.85 PASS AC=2;AF=0.50;AN=4;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.0926;MQ=63.50;MQ0=0;QD=26.82;SB=-300.83;sumGLbyD=25.29 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,35 ./. 1/1:0,2:2:6.02:77,6,0 chr21 34626654 rs2834166 C A 242.80 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=94.88;MQ0=0;QD=18.68;SB=-78.26;sumGLbyD=25.84 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,39 ./. 1/1:0,1:1:3.01:38,3,0 chr21 34628320 rs6517155 T C 399.72 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=92.14;MQ0=0;QD=36.34;SB=-158.32;sumGLbyD=41.77 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:39,3,0 ./. ./. chr21 34632783 . T C 149.50 PASS AC=1;AF=0.17;AN=6;DP=34;DS;Dels=0.00;HRun=0;HaplotypeScore=0.5230;MQ=65.48;MQ0=0;QD=18.69;SB=-0.05;sumGLbyD=25.00 GT:AD:DP:GQ:PL 0/0:15,0:15:45.13:0,45,517 0/0:11,0:11:33.09:0,33,371 0/1:2,6:8:47.31:200,0,47 chr21 34634808 rs6517157 C T 5824.42 PASS AC=2;AF=0.50;AN=4;DB;DP=4;Dels=0.00;HRun=1;HaplotypeScore=0.0551;MQ=64.05;MQ0=0;QD=33.47;SB=-1099.50;sumGLbyD=33.68 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6.02:72,6,0 0/0:2,0:2:3.01:0,3,45 chr21 34634878 rs1131668 G A 10748.66 PASS AC=3;AF=0.50;AN=6;DB;DP=12;Dels=0.00;HRun=0;HaplotypeScore=0.1192;MQ=65.13;MQ0=0;QD=26.09;SB=-465.90;sumGLbyD=24.60 GT:AD:DP:GQ:PL 0/1:2,1:3:27.97:28,0,47 1/1:0,3:3:9.03:109,9,0 0/0:7,0:6:18.04:0,18,187 chr21 34634991 . C A 2097.95 PASS AC=2;AF=0.33;AN=6;DP=69;Dels=0.00;HRun=2;HaplotypeScore=0.4802;MQ=77.54;MQ0=0;QD=14.27;SB=-169.06;sumGLbyD=15.63 GT:AD:DP:GQ:PL 0/1:12,10:21:99:298,0,333 0/1:10,10:19:99:265,0,299 0/0:29,1:29:51.14:0,51,982 chr21 34635065 rs9984273 C T 81364.54 PASS AC=5;AF=0.83;AN=6;DB;DP=132;DS;Dels=0.00;HRun=0;HaplotypeScore=2.2589;MQ=72.62;MQ0=0;QD=27.64;SB=-8094.12;sumGLbyD=27.00 GT:AD:DP:GQ:PL 1/1:0,49:43:99:1496,126,0 1/1:0,45:41:99:1405,120,0 0/1:22,28:48:99:790,0,606 chr21 34640788 rs2834167 A G 98058.37 PASS AC=6;AF=1.00;AN=6;DB;DP=102;DS;Dels=0.00;HRun=0;HaplotypeScore=2.5440;MQ=67.96;MQ0=0;QD=23.55;SB=-42823.29;sumGLbyD=21.98 GT:AD:DP:GQ:PL 1/1:0,34:33:99:1116,99,0 1/1:0,35:33:90.25:1066,90,0 1/1:0,37:36:99:1235,108,0 chr21 34644222 rs1023146 T C 566.77 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=2;HaplotypeScore=0.0782;MQ=114.34;MQ0=0;QD=29.83;SB=-180.07;sumGLbyD=32.94 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:37,3,0 1/1:0,2:1:3.01:32,3,0 chr21 34650791 rs2834168 A G 55.16 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=95.60;MQ0=0;QD=13.79;SB=15.68;sumGLbyD=27.29 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:37,3,0 ./. ./. chr21 34652457 rs2843701 C T 4630.79 PASS AC=1;AF=0.17;AN=6;DB;DP=4;Dels=0.00;HRun=1;HaplotypeScore=0.1222;MQ=62.36;MQ0=0;QD=23.39;SB=-84.86;sumGLbyD=20.91 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,38 0/0:1,0:1:3.01:0,3,34 0/1:1,1:2:23.61:24,0,33 chr21 34656653 rs2850001 G A 86.56 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.1444;MQ=111.12;MQ0=0;QD=14.43;SB=-25.12;sumGLbyD=26.35 GT:AD:DP:GQ:PL ./. 0/0:1,0:1:3.01:0,3,37 1/1:0,1:1:3.01:36,3,0 chr21 34657125 rs2850002 G A 50.69 PASS AC=2;AF=0.50;AN=4;DB;DP=5;Dels=0.00;HRun=0;HaplotypeScore=0.1526;MQ=133.50;MQ0=0;QD=16.90;SB=-24.92;sumGLbyD=38.36 GT:AD:DP:GQ:PL 0/0:4,0:4:12.01:0,12,114 ./. 1/1:0,1:1:3.01:38,3,0 chr21 34660686 . G A 2595.32 PASS AC=1;AF=0.17;AN=6;DP=9;DS;Dels=0.03;HRun=0;HaplotypeScore=5.9538;MQ=58.85;MQ0=0;QD=6.33;SB=-305.17;sumGLbyD=7.21 GT:AD:DP:GQ:PL 0/0:4,0:4:12.04:0,12,150 0/0:3,0:2:6.02:0,6,65 0/1:4,1:3:26.23:26,0,62 chr21 34662894 . A G 70.15 PASS AC=1;AF=0.50;AN=2;DP=2;Dels=0.00;HRun=2;HaplotypeScore=0.1537;MQ=108.27;MQ0=0;QD=14.03;SB=-28.76;sumGLbyD=27.67 GT:AD:DP:GQ:PL ./. ./. 0/1:1,1:2:27.42:27,0,31 chr21 34662972 rs2409484 T C 119.76 PASS AC=1;AF=0.50;AN=2;DB;DP=2;Dels=0.00;HRun=2;HaplotypeScore=0.3228;MQ=99.33;MQ0=0;QD=17.11;SB=-56.74;sumGLbyD=26.65 GT:AD:DP:GQ:PL ./. ./. 0/1:1,1:2:23.61:32,0,24 chr21 34668747 rs3171425 A G 46218.52 PASS AC=3;AF=0.50;AN=6;DB;DP=12;Dels=0.00;HRun=0;HaplotypeScore=1.1064;MQ=60.93;MQ0=0;QD=27.61;SB=-5462.27;sumGLbyD=26.51 GT:AD:DP:GQ:PL 0/1:1,1:2:29.23:29,0,30 0/1:1,2:3:25.33:60,0,25 0/1:4,3:7:88.11:88,0,124 chr21 34668976 rs8178562 G A 1914.36 PASS AC=3;AF=0.75;AN=4;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0405;MQ=63.48;MQ0=0;QD=20.58;SB=-218.30;sumGLbyD=24.19 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:33,3,0 0/1:1,0:1:1.76:0,3,32 chr21 34669572 rs7281762 G A 92.30 PASS AC=1;AF=0.50;AN=2;DB;DP=1;Dels=0.00;HRun=5;HaplotypeScore=0.0000;MQ=86.47;MQ0=0;QD=23.08;SB=-62.19;sumGLbyD=39.08 GT:AD:DP:GQ:PL ./. 0/1:0,1:1:1.76:36,3,0 ./. chr21 34683512 rs6517160 A G 97.35 PASS AC=1;AF=0.50;AN=2;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=137.22;MQ0=0;QD=19.47;SB=-52.47;sumGLbyD=30.22 GT:AD:DP:GQ:PL 0/1:1,1:2:30.11:33,0,30 ./. ./. chr21 34684534 rs9984454 C T 157.84 PASS AC=1;AF=0.50;AN=2;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=137.22;MQ0=0;QD=22.55;SB=-23.10;sumGLbyD=30.85 GT:AD:DP:GQ:PL ./. ./. 0/1:1,1:2:29.23:29,0,32 chr21 34686841 rs9982088 A G 191.49 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=91.03;MQ0=0;QD=21.28;SB=-101.75;sumGLbyD=29.36 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:32,3,0 ./. chr21 34691802 rs9981180 C T 340.43 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0391;MQ=86.47;MQ0=0;QD=26.19;SB=-90.89;sumGLbyD=31.99 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:36,3,0 ./. ./. chr21 34692550 rs2734723 T C 456.56 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=110.02;MQ0=0;QD=32.61;SB=-212.17;sumGLbyD=36.79 GT:AD:DP:GQ:PL ./. ./. 1/1:0,2:2:6.02:76,6,0 chr21 34693011 rs2834190 A T 93.06 PASS AC=1;AF=0.50;AN=2;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0361;MQ=100.60;MQ0=0;QD=13.29;SB=-43.06;sumGLbyD=23.43 GT:AD:DP:GQ:PL ./. ./. 0/1:1,1:2:27.42:29,0,27 chr21 34693063 rs9984439 A G 118.09 PASS AC=2;AF=0.50;AN=4;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.1043;MQ=132.23;MQ0=0;QD=19.68;SB=-57.60;sumGLbyD=30.71 GT:AD:DP:GQ:PL 0/1:0,1:1:1.76:32,3,0 ./. 0/1:1,1:2:30.96:31,0,31 chr21 34693735 . A C 86.64 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.7045;MQ=39.82;MQ0=0;QD=17.33;SB=8.41;sumGLbyD=29.03 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:38,3,0 ./. chr21 34693758 . A G 76.78 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.18;HRun=0;HaplotypeScore=1.0848;MQ=41.82;MQ0=0;QD=15.36;SB=13.92;sumGLbyD=28.16 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:33,3,0 ./. chr21 34693790 . A G 52.83 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.4284;MQ=46.87;MQ0=0;QD=13.21;SB=5.00;sumGLbyD=27.28 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:37,3,0 ./. chr21 34695875 . C A 196.10 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.08;HRun=1;HaplotypeScore=0.0000;MQ=32.69;MQ0=3;QD=28.01;SB=-100.49;sumGLbyD=35.27 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:36,3,0 ./. chr21 34695888 . C A 463.92 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=38.65;MQ0=3;QD=30.93;SB=-233.29;sumGLbyD=35.29 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:37,3,0 ./. chr21 34696148 . T G 151.53 PASS AC=2;AF=0.50;AN=4;DP=2;Dels=0.00;HRun=2;HaplotypeScore=0.0555;MQ=49.71;MQ0=2;QD=18.94;SB=-58.73;sumGLbyD=30.73 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,36 ./. 1/1:0,1:1:3.01:37,3,0 chr21 34696227 rs62228037 A G 104.66 PASS AC=1;AF=0.25;AN=4;DB;DP=2;Dels=0.00;HRun=2;HaplotypeScore=0.2437;MQ=52.70;MQ0=2;QD=14.95;SB=-45.20;sumGLbyD=25.10 GT:AD:DP:GQ:PL ./. 0/1:2,1:1:1.76:28,3,0 0/0:1,0:1:3.01:0,3,36 chr21 34696266 rs62228038 G A 230.34 PASS AC=2;AF=0.33;AN=6;DB;DP=3;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=58.14;MQ0=1;QD=19.19;SB=-97.70;sumGLbyD=27.20 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:37,3,0 0/0:1,1:1:3:0,3,29 0/0:1,0:1:3.01:0,3,39 chr21 34696292 rs62228039 G A 380.03 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=57.89;MQ0=0;QD=25.34;SB=-198.23;sumGLbyD=32.03 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:37,3,0 ./. ./. chr21 34696707 rs2843710 C G 118.83 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.1155;MQ=76.85;MQ0=0;QD=23.77;SB=-26.94;sumGLbyD=40.09 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:36,3,0 chr21 34697264 rs2850015 T C 38447.15 PASS AC=3;AF=0.50;AN=6;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=2.8603;MQ=47.99;MQ0=0;QD=20.39;SB=-7399.37;sumGLbyD=19.38 GT:AD:DP:GQ:PL 0/1:2,0:1:1.76:0,3,34 1/1:0,1:1:3.01:30,3,0 0/0:1,0:1:3.01:0,3,37 chr21 34698807 rs2211687 A G 98.25 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=98.45;MQ0=0;QD=24.56;SB=-30.50;sumGLbyD=40.57 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:38,3,0 ./. ./. chr21 34698924 rs2226299 A G 179.09 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=3;HaplotypeScore=0.0000;MQ=102.58;MQ0=0;QD=29.85;SB=-58.42;sumGLbyD=37.91 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:32,3,0 ./. ./. chr21 34699006 rs2249448 G A 220.84 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=113.89;MQ0=0;QD=27.61;SB=-88.73;sumGLbyD=37.63 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:36,3,0 1/1:0,1:1:3.01:34,3,0 ./. chr21 34706870 rs2843994 G A 11073.86 PASS AC=2;AF=0.50;AN=4;DB;DP=8;Dels=0.00;HRun=1;HaplotypeScore=0.0690;MQ=61.74;MQ0=0;QD=28.69;SB=-1017.13;sumGLbyD=27.67 GT:AD:DP:GQ:PL 0/1:1,3:4:16.61:95,0,17 ./. 0/1:2,2:4:35.74:36,0,61 chr21 34707808 rs2243592 T G 64777.15 PASS AC=2;AF=0.33;AN=6;DB;DP=139;DS;Dels=0.00;HRun=0;HaplotypeScore=0.9452;MQ=72.46;MQ0=0;QD=21.69;SB=-13406.47;sumGLbyD=19.67 GT:AD:DP:GQ:PL 0/1:22,26:47:99:645,0,662 0/0:42,0:42:99:0,123,1548 0/1:21,29:50:99:782,0,624 chr21 34708061 rs2243594 A G 41664.42 PASS AC=2;AF=0.33;AN=6;DB;DP=110;DS;Dels=0.00;HRun=1;HaplotypeScore=0.4533;MQ=76.74;MQ0=0;QD=25.58;SB=-3086.78;sumGLbyD=23.47 GT:AD:DP:GQ:PL 0/1:17,20:37:99:618,0,521 0/0:30,0:30:90.28:0,90,1127 0/1:17,26:43:99:850,0,499 chr21 34708140 rs2253413 A C 13575.35 PASS AC=2;AF=0.33;AN=6;DB;DP=20;Dels=0.00;HRun=0;HaplotypeScore=0.6532;MQ=67.25;MQ0=0;QD=21.83;SB=-1197.26;sumGLbyD=19.88 GT:AD:DP:GQ:PL 0/1:1,3:4:22.32:98,0,22 0/0:7,0:7:21.06:0,21,249 0/1:3,6:9:83.01:189,0,83 chr21 34710566 rs17875806 T A 94.60 PASS AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=115.89;MQ0=0;QD=23.65;SB=-30.13;sumGLbyD=36.25 GT:AD:DP:GQ:PL 1/1:0,3:3:9.03:106,9,0 ./. ./. chr21 34714551 rs2843971 C T 288.59 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.1538;MQ=98.60;MQ0=0;QD=24.05;SB=-140.92;sumGLbyD=31.11 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,38 ./. 1/1:0,1:1:3.01:32,3,0 chr21 34715699 rs2257167 G C 61840.21 PASS AC=2;AF=0.33;AN=6;DB;DP=150;DS;Dels=0.00;HRun=0;HaplotypeScore=0.8175;MQ=74.89;MQ0=0;QD=23.80;SB=-22552.74;sumGLbyD=21.78 GT:AD:DP:GQ:PL 0/1:24,26:50:99:807,0,726 0/0:50,0:50:99:0,150,1877 0/1:29,21:50:99:630,0,942 chr21 34725468 rs914141 T G 13837.53 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0474;MQ=61.58;MQ0=0;QD=38.33;SB=-2030.90;sumGLbyD=38.53 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:37,3,0 ./. 1/1:0,1:1:3.01:39,3,0 chr21 34725807 rs914142 G A 52206.29 PASS AC=6;AF=1.00;AN=6;DB;DP=20;Dels=0.00;HRun=0;HaplotypeScore=0.5741;MQ=64.20;MQ0=0;QD=34.48;SB=-6472.30;sumGLbyD=34.48 GT:AD:DP:GQ:PL 1/1:0,8:8:24.07:280,24,0 1/1:0,8:8:24.07:278,24,0 1/1:0,4:4:12.03:137,12,0 chr21 34726127 rs2856973 T A 112575.16 PASS AC=6;AF=1.00;AN=6;DB;DP=150;DS;Dels=0.00;HRun=2;HaplotypeScore=0.4776;MQ=80.47;MQ0=0;QD=37.03;SB=-13974.16;sumGLbyD=37.02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1785,147,0 1/1:0,50:50:99:1748,144,0 1/1:0,50:50:99:1753,144,0 chr21 34726230 rs2254180 T C 21404.49 PASS AC=2;AF=0.33;AN=6;DB;DP=64;DS;Dels=0.00;HRun=1;HaplotypeScore=0.2454;MQ=78.54;MQ0=0;QD=24.92;SB=-697.72;sumGLbyD=22.85 GT:AD:DP:GQ:PL 0/1:11,6:17:99:165,0,349 0/0:22,0:22:66.20:0,66,775 0/1:18,7:25:99:195,0,571 chr21 34727231 rs2254305 C T 2209.71 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=67.72;MQ0=0;QD=37.45;SB=-259.02;sumGLbyD=39.32 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:38,3,0 chr21 34727330 rs1041868 G A 2467.15 PASS AC=2;AF=0.50;AN=4;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.2020;MQ=64.64;MQ0=0;QD=22.43;SB=-312.73;sumGLbyD=25.86 GT:AD:DP:GQ:PL ./. 0/0:2,0:2:3.01:0,3,45 1/1:0,1:1:3.01:34,3,0 chr21 34727487 rs2254315 C T 15115.02 PASS AC=2;AF=0.33;AN=6;DB;DP=30;Dels=0.00;HRun=0;HaplotypeScore=0.1577;MQ=73.22;MQ0=0;QD=24.54;SB=-1630.60;sumGLbyD=22.51 GT:AD:DP:GQ:PL 0/1:5,12:17:99:349,0,136 0/0:4,0:4:12.03:0,12,139 0/1:2,7:9:48.51:215,0,49 chr21 34730954 rs2834202 G A 253.98 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=105.90;MQ0=0;QD=31.75;SB=-101.20;sumGLbyD=37.70 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:34,3,0 ./. ./. chr21 34735546 rs13051466 G A 84.06 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=94.55;MQ0=0;QD=21.02;SB=-46.05;sumGLbyD=37.02 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:35,3,0 ./. chr21 34736479 rs9975639 C T 115.54 PASS AC=2;AF=0.33;AN=6;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=137.22;MQ0=0;QD=23.11;SB=-18.11;sumGLbyD=38.05 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:35,3,0 0/0:1,0:1:3.01:0,3,38 0/0:1,0:1:3.01:0,3,32 chr21 34736487 rs8132072 G A 155.22 PASS AC=1;AF=0.25;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=117.27;MQ0=0;QD=25.87;SB=-89.54;sumGLbyD=38.85 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,33 0/1:0,1:1:1.76:33,3,0 ./. chr21 34737271 rs9978569 C T 187.47 PASS AC=1;AF=0.25;AN=4;DB;DP=5;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=132.08;MQ0=0;QD=17.04;SB=-97.49;sumGLbyD=24.26 GT:AD:DP:GQ:PL ./. 0/0:1,0:1:3.01:0,3,34 0/1:2,2:4:48.79:49,0,62 chr21 34737449 rs7277895 T A 114.26 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=5;HaplotypeScore=0.0000;MQ=125.63;MQ0=0;QD=22.85;SB=-42.17;sumGLbyD=36.48 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,35 1/1:0,1:1:3.01:34,3,0 ./. chr21 34739174 rs9984973 G C 66.74 PASS AC=1;AF=0.50;AN=2;DB;DP=4;Dels=0.00;HRun=0;HaplotypeScore=0.0880;MQ=121.14;MQ0=0;QD=8.34;SB=-40.18;sumGLbyD=16.88 GT:AD:DP:GQ:PL ./. ./. 0/1:3,1:4:24.41:24,0,72 chr21 34739223 rs4816451 G A 160.14 PASS AC=1;AF=0.50;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0462;MQ=79.02;MQ0=0;QD=20.02;SB=-69.90;sumGLbyD=31.08 GT:AD:DP:GQ:PL ./. ./. 0/1:0,1:1:1.76:37,3,0 chr21 34743410 rs2409490 T C 549.73 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0782;MQ=82.03;MQ0=0;QD=30.54;SB=-310.14;sumGLbyD=33.89 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:38,3,0 chr21 34743800 rs2247703 C T 258.52 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=97.31;MQ0=0;QD=28.72;SB=-142.06;sumGLbyD=34.30 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:35,3,0 ./. ./. chr21 34754794 rs62226377 A G 184.52 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0914;MQ=80.14;MQ0=0;QD=20.50;SB=-115.54;sumGLbyD=30.06 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:37,3,0 ./. chr21 34764921 rs2040110 G T 125.22 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.2022;MQ=92.12;MQ0=0;QD=17.89;SB=-55.21;sumGLbyD=28.91 GT:AD:DP:GQ:PL ./. ./. 1/1:1,1:1:3.01:33,3,0 chr21 34776695 rs2284553 A G 375.86 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=88.06;MQ0=0;QD=28.91;SB=-152.04;sumGLbyD=34.09 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:36,3,0 ./. chr21 34779062 rs8127270 A T 100.49 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=121.59;MQ0=0;QD=25.12;SB=-60.06;sumGLbyD=35.89 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:33,3,0 ./. chr21 34785672 rs9808685 G T 547.24 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0714;MQ=80.71;MQ0=0;QD=32.19;SB=-186.68;sumGLbyD=36.38 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:35,3,0 ./. ./. chr21 34787312 rs9808753 A G 58549.27 PASS AC=1;AF=0.17;AN=6;DB;DP=141;DS;Dels=0.00;HRun=0;HaplotypeScore=2.1234;MQ=72.30;MQ0=0;QD=20.00;SB=-17291.68;sumGLbyD=17.99 GT:AD:DP:GQ:PL 0/0:50,0:48:99:0,141,1637 0/1:25,24:46:99:508,0,718 0/0:49,0:47:99:0,138,1670 chr21 34789695 rs7277808 G C 351.75 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=122.56;MQ0=0;QD=31.98;SB=-102.14;sumGLbyD=38.52 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:39,3,0 1/1:0,1:1:3.01:36,3,0 ./. chr21 34789808 rs2834211 T C 74.49 PASS AC=1;AF=0.50;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=117.27;MQ0=0;QD=24.83;SB=-31.72;sumGLbyD=42.53 GT:AD:DP:GQ:PL 0/1:0,1:1:1.76:39,3,0 ./. ./. chr21 34793706 rs2834214 C T 18129.99 PASS AC=1;AF=0.17;AN=6;DB;DP=96;DS;Dels=0.00;HRun=0;HaplotypeScore=5.0773;MQ=68.93;MQ0=0;QD=17.10;SB=-1448.69;sumGLbyD=14.69 GT:AD:DP:GQ:PL 0/0:37,0:36:99:0,108,1342 0/0:26,0:23:69.20:0,69,819 0/1:15,26:37:99:682,0,381 chr21 34799350 rs11910627 C G 136151.31 PASS AC=6;AF=1.00;AN=6;DB;DP=101;DS;Dels=0.00;HRun=0;HaplotypeScore=0.6846;MQ=71.85;MQ0=0;QD=36.13;SB=-27693.27;sumGLbyD=36.10 GT:AD:DP:GQ:PL 1/1:0,37:36:96.27:1179,96,0 1/1:0,24:24:66.21:834,66,0 1/1:0,42:41:99:1376,111,0 chr21 34800872 rs8130924 A G 419.71 PASS AC=4;AF=1.00;AN=4;DB;DP=3;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=128.13;MQ0=0;QD=32.29;SB=-230.63;sumGLbyD=36.62 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:39,3,0 1/1:0,2:2:6.02:76,6,0 ./. chr21 34801876 rs8128362 T C 335.12 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=2;HaplotypeScore=0.0000;MQ=120.10;MQ0=0;QD=30.47;SB=-183.01;sumGLbyD=35.70 GT:AD:DP:GQ:PL ./. 1/1:0,2:1:3.01:38,3,0 ./. chr21 34801908 rs8128483 T C 300.41 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0769;MQ=105.08;MQ0=0;QD=23.11;SB=-183.79;sumGLbyD=29.42 GT:AD:DP:GQ:PL ./. 1/1:0,2:1:3.01:32,3,0 ./. chr21 34802841 rs8132006 A C 305.63 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=101.83;MQ0=0;QD=33.96;SB=-119.17;sumGLbyD=39.80 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:35,3,0 ./. ./. chr21 34802946 rs8132535 G A 226.28 PASS AC=2;AF=0.50;AN=4;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=129.05;MQ0=0;QD=22.63;SB=-51.64;sumGLbyD=30.16 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:73,6,0 ./. 0/0:1,0:1:3.01:0,3,32 chr21 34804966 rs1532 T C 147055.46 PASS AC=6;AF=1.00;AN=6;DB;DP=149;DS;Dels=0.00;HRun=0;HaplotypeScore=1.4567;MQ=74.26;MQ0=0;QD=33.99;SB=-26020.64;sumGLbyD=33.93 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1808,150,0 1/1:0,50:50:99:1767,147,0 1/1:0,50:49:99:1758,147,0 chr21 34806091 rs17882822 A G 508.18 PASS AC=3;AF=0.75;AN=4;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=99.47;MQ0=0;QD=28.23;SB=-166.35;sumGLbyD=33.98 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:38,3,0 ./. 0/1:1,1:2:30.11:33,0,30 chr21 34806218 rs2284554 T C 531.72 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=70.39;MQ0=0;QD=25.32;SB=-201.96;sumGLbyD=30.47 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:31,3,0 ./. ./. chr21 34806288 rs2284555 G A 314.48 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=78.85;MQ0=0;QD=26.21;SB=-165.82;sumGLbyD=32.92 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:35,3,0 ./. ./. chr21 34806305 rs2284556 G A 313.21 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=2;HaplotypeScore=0.1333;MQ=109.12;MQ0=0;QD=31.32;SB=-159.22;sumGLbyD=38.12 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:36,3,0 1/1:0,1:1:3.01:36,3,0 ./. chr21 34808289 rs2409493 A G 191.21 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0782;MQ=97.20;MQ0=0;QD=23.90;SB=-88.73;sumGLbyD=30.70 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:31,3,0 ./. ./. chr21 34808649 . T G 50.89 PASS AC=1;AF=0.50;AN=2;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0770;MQ=74.94;MQ0=0;QD=16.96;SB=-23.62;sumGLbyD=40.48 GT:AD:DP:GQ:PL ./. 0/1:0,1:1:1.76:38,3,0 ./. chr21 34809049 rs2040120 T A 101891.10 PASS AC=5;AF=0.83;AN=6;DB;DP=145;DS;Dels=0.01;HRun=5;HaplotypeScore=1.6630;MQ=78.45;MQ0=1;QD=32.44;SB=-4536.96;sumGLbyD=31.67 GT:AD:DP:GQ:PL 1/1:0,50:49:99:1757,147,0 1/1:0,49:48:99:1713,144,0 0/1:28,22:48:99:595,0,770 chr21 34809693 rs1059293 C T 2447.45 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0174;MQ=64.26;MQ0=0;QD=31.79;SB=-214.77;sumGLbyD=34.89 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:34,3,0 ./. chr21 34810007 rs8131980 A G 279.79 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=3;HaplotypeScore=0.0000;MQ=100.31;MQ0=0;QD=31.09;SB=-117.21;sumGLbyD=37.24 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:39,3,0 chr21 34811711 rs6517171 C G 414.29 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=89.85;MQ0=0;QD=31.87;SB=-190.08;sumGLbyD=36.58 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:38,3,0 chr21 34812114 rs35573407 A G 290.12 PASS AC=4;AF=1.00;AN=4;DB;DP=3;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=143.10;MQ0=0;QD=29.01;SB=-141.50;sumGLbyD=34.26 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6.02:75,6,0 1/1:0,1:1:3.01:36,3,0 chr21 34812117 rs62226409 C G 257.28 PASS AC=4;AF=1.00;AN=4;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=143.10;MQ0=0;QD=28.59;SB=-142.90;sumGLbyD=34.17 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6.02:74,6,0 1/1:0,1:1:3.01:37,3,0 chr21 34812118 rs62226410 C G 219.18 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=124.83;MQ0=0;QD=27.40;SB=-136.22;sumGLbyD=33.75 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:34,3,0 1/1:0,1:1:3.01:37,3,0 chr21 34813038 rs4816454 G A 422.89 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=3;HaplotypeScore=0.2997;MQ=76.46;MQ0=2;QD=28.19;SB=-208.60;sumGLbyD=31.93 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:37,3,0 ./. chr21 34813154 rs4817566 A C 355.22 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=80.49;MQ0=1;QD=29.60;SB=-184.06;sumGLbyD=34.58 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:34,3,0 chr21 34814234 . G A 57.81 PASS AC=1;AF=0.25;AN=4;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=102.98;MQ0=0;QD=19.27;SB=7.29;sumGLbyD=41.46 GT:AD:DP:GQ:PL 0/1:0,1:1:1.76:38,3,0 0/0:1,0:1:3.01:0,3,39 ./. chr21 34815111 rs1972256 C T 306.48 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=2;HaplotypeScore=0.0998;MQ=86.44;MQ0=0;QD=27.86;SB=-61.39;sumGLbyD=33.98 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:37,3,0 chr21 34815794 rs4816455 G A 249.86 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=116.09;MQ0=0;QD=31.23;SB=-137.24;sumGLbyD=39.50 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6.02:72,6,0 ./. chr21 34816479 rs7276112 A G 336.84 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=95.42;MQ0=0;QD=30.62;SB=-166.30;sumGLbyD=37.46 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:35,3,0 ./. 0/0:1,0:1:3.01:0,3,36 chr21 34816967 . T A 53.91 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=81.88;MQ0=0;QD=13.48;SB=-36.27;sumGLbyD=30.12 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:37,3,0 ./. chr21 34816988 rs9981203 C T 521.11 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0293;MQ=80.82;MQ0=0;QD=32.57;SB=-139.79;sumGLbyD=36.96 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:36,3,0 ./. chr21 34818296 . C T 177.15 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=100.00;MQ0=0;QD=22.14;SB=-115.98;sumGLbyD=28.22 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:39,3,0 ./. ./. chr21 34818962 rs13048781 C A 319.04 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=23;HaplotypeScore=0.5728;MQ=106.15;MQ0=0;QD=22.79;SB=-135.37;sumGLbyD=28.17 GT:AD:DP:GQ:PL 1/1:2,3:2:6.02:70,6,0 ./. ./. chr21 34818986 rs13048792 C A 418.88 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=23;HaplotypeScore=0.7727;MQ=72.52;MQ0=0;QD=26.18;SB=-73.91;sumGLbyD=30.01 GT:AD:DP:GQ:PL 1/1:2,1:1:3.01:34,3,0 ./. ./. chr21 34819049 rs9976985 T C 490.31 PASS AC=4;AF=1.00;AN=4;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=118.55;MQ0=0;QD=35.02;SB=-191.72;sumGLbyD=39.35 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:76,6,0 ./. 1/1:0,1:1:3.01:38,3,0 chr21 34820803 rs8133486 A T 189.94 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=10;HaplotypeScore=0.0000;MQ=93.85;MQ0=0;QD=27.13;SB=-60.20;sumGLbyD=35.98 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:34,3,0 ./. ./. chr21 34821691 rs1044213 G C 213.09 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=2;HaplotypeScore=0.1088;MQ=89.12;MQ0=0;QD=30.44;SB=-32.49;sumGLbyD=40.11 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:35,3,0 ./. ./. chr21 34823252 rs2834220 C T 114800.84 PASS AC=5;AF=0.83;AN=6;DB;DP=81;DS;Dels=0.00;HRun=0;HaplotypeScore=0.6493;MQ=69.89;MQ0=0;QD=32.27;SB=-8185.64;sumGLbyD=31.50 GT:AD:DP:GQ:PL 1/1:0,20:20:60.16:691,60,0 1/1:0,28:28:84.23:963,84,0 0/1:18,15:33:99:429,0,573 chr21 34824203 rs928739 C T 295.46 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=95.59;MQ0=0;QD=26.86;SB=-102.28;sumGLbyD=32.58 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:32,3,0 ./. ./. chr21 34824478 rs2834221 C T 292.23 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=110.02;MQ0=0;QD=24.35;SB=-139.25;sumGLbyD=30.01 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:35,3,0 ./. 0/0:1,0:1:3.01:0,3,34 chr21 34827112 rs10154248 C T 169.24 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=108.76;MQ0=0;QD=28.21;SB=-0.03;sumGLbyD=36.27 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:36,3,0 ./. chr21 34827421 rs9974084 C A 758.89 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0275;MQ=77.36;MQ0=0;QD=34.49;SB=-367.82;sumGLbyD=38.11 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:36,3,0 chr21 34827840 rs2834226 C A 20177.38 PASS AC=4;AF=0.67;AN=6;DB;DP=15;Dels=0.00;HRun=0;HaplotypeScore=0.4938;MQ=63.70;MQ0=0;QD=22.70;SB=-1344.54;sumGLbyD=20.45 GT:AD:DP:GQ:PL 1/1:0,4:4:12.04:141,12,0 0/1:5,2:7:44.87:45,0,170 0/1:2,2:4:59.30:59,0,60 chr21 34829287 rs58525092 T C 279.66 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=130.91;MQ0=0;QD=31.07;SB=-64.82;sumGLbyD=36.91 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:36,3,0 1/1:0,1:1:3.01:38,3,0 ./. chr21 34829419 rs56884576 A G 480.96 PASS AC=6;AF=1.00;AN=6;DB;DP=4;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=140.22;MQ0=0;QD=32.06;SB=-163.80;sumGLbyD=36.29 GT:AD:DP:GQ:PL 1/1:0,1:1:3:29,3,0 1/1:0,1:1:3.01:32,3,0 1/1:0,2:2:6.02:75,6,0 chr21 34832985 rs2245573 C A 43779.25 PASS AC=5;AF=0.83;AN=6;DB;DP=12;Dels=0.00;HRun=10;HaplotypeScore=0.3926;MQ=63.43;MQ0=0;QD=32.72;SB=-2709.84;sumGLbyD=31.90 GT:AD:DP:GQ:PL 1/1:0,3:3:9.03:109,9,0 1/1:0,5:5:15.04:177,15,0 0/1:1,3:4:25.76:98,0,26 chr21 34833123 rs2248340 C T 10382.64 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0707;MQ=62.28;MQ0=0;QD=33.60;SB=-1135.83;sumGLbyD=33.31 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:34,3,0 ./. 0/0:1,0:1:3.01:0,3,39 chr21 34836957 rs13051046 T A 382.22 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=54.24;MQ0=0;QD=31.85;SB=-65.21;sumGLbyD=36.78 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3:26,3,0 ./. chr21 34837048 rs57996174 T C 116.30 PASS AC=1;AF=0.50;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0335;MQ=81.90;MQ0=0;QD=23.26;SB=6.74;sumGLbyD=39.27 GT:AD:DP:GQ:PL ./. ./. 0/1:0,1:1:1.76:31,3,0 chr21 34837144 rs2186280 A G 1710.17 PASS AC=4;AF=1.00;AN=4;DB;DP=4;Dels=0.00;HRun=0;HaplotypeScore=0.2110;MQ=72.11;MQ0=0;QD=30.54;SB=-433.91;sumGLbyD=33.82 GT:AD:DP:GQ:PL 1/1:0,3:3:6.02:81,6,0 ./. 1/1:0,1:1:3.01:39,3,0 chr21 34837623 rs2248820 C A 146759.73 PASS AC=5;AF=0.83;AN=6;DB;DP=146;DS;Dels=0.00;HRun=0;HaplotypeScore=1.8512;MQ=71.69;MQ0=0;QD=29.65;SB=-28293.09;sumGLbyD=28.96 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1760,144,0 1/1:0,50:48:99:1662,138,0 0/1:23,27:49:99:845,0,675 chr21 34837786 rs2243511 A G 53219.37 PASS AC=1;AF=0.17;AN=6;DB;DP=118;DS;Dels=0.00;HRun=0;HaplotypeScore=0.5196;MQ=74.76;MQ0=0;QD=25.19;SB=-3419.74;sumGLbyD=23.11 GT:AD:DP:GQ:PL 0/0:46,1:45:99:0,135,1538 0/1:13,24:37:99:784,0,336 0/0:36,0:36:99:0,108,1252 chr21 34838589 rs2850028 T C 201.37 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=97.03;MQ0=0;QD=28.77;SB=-51.51;sumGLbyD=38.99 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:37,3,0 ./. ./. chr21 34839533 rs743334 A G 10852.81 PASS AC=1;AF=0.17;AN=6;DB;DP=8;DS;Dels=0.00;HRun=0;HaplotypeScore=0.7854;MQ=61.06;MQ0=0;QD=20.29;SB=-645.85;sumGLbyD=17.44 GT:AD:DP:GQ:PL 0/0:3,0:3:9.03:0,9,104 0/0:2,0:2:6.02:0,6,70 0/1:2,1:3:26.23:26,0,61 chr21 34843816 . T C 51.12 PASS AC=2;AF=0.50;AN=4;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.0832;MQ=121.86;MQ0=0;QD=17.04;SB=-31.18;sumGLbyD=36.05 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6.01:64,6,0 0/0:1,0:1:3.01:0,3,35 chr21 34847394 . C A 72.98 PASS AC=1;AF=0.50;AN=2;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0782;MQ=105.90;MQ0=0;QD=24.33;SB=2.98;sumGLbyD=42.02 GT:AD:DP:GQ:PL 0/1:0,1:1:1.76:38,3,0 ./. ./. chr21 34848517 . G C 257.14 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=3;HaplotypeScore=0.2346;MQ=100.31;MQ0=0;QD=28.57;SB=-102.40;sumGLbyD=34.47 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:37,3,0 ./. chr21 34850744 rs2211688 T C 283.10 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0853;MQ=88.06;MQ0=0;QD=31.46;SB=-72.86;sumGLbyD=39.82 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:39,3,0 chr21 34857840 rs6517175 T C 302.16 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=100.31;MQ0=0;QD=33.57;SB=-147.95;sumGLbyD=39.41 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:39,3,0 ./. chr21 34864284 rs3761347 T C 52.20 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=117.13;MQ0=0;QD=17.40;SB=-20.62;sumGLbyD=34.85 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:6.02:68,6,0 ./. chr21 34868494 rs9976586 G C 805.67 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=92.53;MQ0=0;QD=33.57;SB=-410.17;sumGLbyD=36.88 GT:AD:DP:GQ:PL ./. ./. 1/1:0,2:2:6.02:75,6,0 chr21 34868636 rs915562 A G 767.95 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=2;HaplotypeScore=0.0313;MQ=89.62;MQ0=0;QD=30.72;SB=-396.98;sumGLbyD=33.29 GT:AD:DP:GQ:PL 1/1:0,2:2:3.01:45,3,0 ./. ./. chr21 34871281 rs4816459 A G 568.90 PASS AC=1;AF=0.50;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=57.37;MQ0=0;QD=31.61;SB=-164.27;sumGLbyD=35.87 GT:AD:DP:GQ:PL ./. 0/1:1,0:1:1.76:0,3,33 ./. chr21 34876708 rs2070388 G C 48146.71 PASS AC=4;AF=0.67;AN=6;DB;DP=138;DS;Dels=0.00;HRun=0;HaplotypeScore=1.3978;MQ=71.92;MQ0=0;QD=21.78;SB=-15367.45;sumGLbyD=19.60 GT:AD:DP:GQ:PL 1/1:0,49:48:99:1736,144,0 0/1:22,22:44:99:654,0,667 0/1:19,28:46:99:842,0,563 chr21 34878450 rs2070390 A T 14980.52 PASS AC=1;AF=0.17;AN=6;DB;DP=115;DS;Dels=0.00;HRun=1;HaplotypeScore=5.7325;MQ=76.35;MQ0=0;QD=16.53;SB=-1576.83;sumGLbyD=14.02 GT:AD:DP:GQ:PL 0/0:40,4:39:99:0,114,1243 0/0:43,4:38:99:0,114,1219 0/1:20,24:38:99:554,0,485 chr21 34883618 rs8971 T C 24677.62 PASS AC=1;AF=0.17;AN=6;DB;DP=63;DS;Dels=0.00;HRun=3;HaplotypeScore=2.1959;MQ=64.93;MQ0=0;QD=17.14;SB=-9903.73;sumGLbyD=14.58 GT:AD:DP:GQ:PL 0/0:27,0:24:66.19:0,66,788 0/0:15,0:14:39.11:0,39,456 0/1:13,12:25:99:372,0,365 chr21 34889505 . A G 26315.38 PASS AC=1;AF=0.17;AN=6;DP=138;DS;Dels=0.00;HRun=0;HaplotypeScore=0.9244;MQ=74.06;MQ0=0;QD=23.16;SB=-10141.06;sumGLbyD=20.85 GT:AD:DP:GQ:PL 0/0:49,0:49:99:0,147,1737 0/1:23,23:45:99:713,0,641 0/0:45,0:44:99:0,132,1591 chr21 34891096 rs62227660 G A 5589.37 PASS AC=1;AF=0.17;AN=6;DB;DP=21;Dels=0.00;HRun=1;HaplotypeScore=0.4407;MQ=67.12;MQ0=0;QD=17.41;SB=-1873.92;sumGLbyD=14.75 GT:AD:DP:GQ:PL 0/0:7,0:7:21.06:0,21,252 0/0:5,0:5:15.05:0,15,185 0/1:3,6:9:85.48:141,0,85 chr21 34892896 rs2834232 C T 16849.33 PASS AC=1;AF=0.17;AN=6;DB;DP=94;DS;Dels=0.00;HRun=0;HaplotypeScore=0.6541;MQ=72.19;MQ0=0;QD=19.26;SB=-2961.02;sumGLbyD=16.50 GT:AD:DP:GQ:PL 0/0:26,0:26:78.24:0,78,965 0/0:29,0:30:87.27:0,87,1074 0/1:19,19:38:99:535,0,607 chr21 34893344 rs2834233 A G 60865.25 PASS AC=1;AF=0.17;AN=6;DB;DP=148;DS;Dels=0.00;HRun=0;HaplotypeScore=0.8029;MQ=76.26;MQ0=0;QD=24.18;SB=-12226.24;sumGLbyD=22.24 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,150,1738 0/1:18,32:50:99:1040,0,477 0/0:49,1:48:99:0,141,1661 chr21 34894315 rs2007053 C T 61144.76 PASS AC=6;AF=1.00;AN=6;DB;DP=9;Dels=0.00;HRun=0;HaplotypeScore=2.3250;MQ=56.72;MQ0=0;QD=29.97;SB=-4040.97;sumGLbyD=29.92 GT:AD:DP:GQ:PL 1/1:0,4:4:12.03:128,12,0 1/1:0,2:2:6.02:69,6,0 1/1:0,3:3:9.02:102,9,0 chr21 34894623 rs2834234 T C 159786.87 PASS AC=6;AF=1.00;AN=6;DB;DP=110;DS;Dels=0.00;HRun=1;HaplotypeScore=0.8016;MQ=71.00;MQ0=0;QD=37.74;SB=-19465.29;sumGLbyD=37.68 GT:AD:DP:GQ:PL 1/1:0,40:39:99:1445,117,0 1/1:0,32:32:93.29:1172,93,0 1/1:0,39:39:99:1477,117,0 chr21 34894797 rs4817577 C A 20046.74 PASS AC=1;AF=0.25;AN=4;DB;DP=3;Dels=0.00;HRun=1;HaplotypeScore=0.2028;MQ=60.68;MQ0=0;QD=28.76;SB=-3034.96;sumGLbyD=27.46 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,38 ./. 0/1:1,1:2:30.11:30,0,33 chr21 34896962 rs1804385 C G 12074.21 PASS AC=1;AF=0.17;AN=6;DB;DP=10;DS;Dels=0.00;HRun=0;HaplotypeScore=0.6176;MQ=61.84;MQ0=0;QD=20.57;SB=-1265.64;sumGLbyD=17.85 GT:AD:DP:GQ:PL 0/0:4,0:4:12.04:0,12,144 0/0:3,0:3:9.03:0,9,105 0/1:1,2:3:27.95:67,0,28 chr21 34897113 rs8788 C T 188497.16 PASS AC=6;AF=1.00;AN=6;DB;DP=149;DS;Dels=0.00;HRun=0;HaplotypeScore=1.4467;MQ=71.69;MQ0=0;QD=35.22;SB=-66032.56;sumGLbyD=35.16 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1670,141,0 1/1:1,48:49:99:1594,104,0 1/1:0,50:50:99:1769,150,0 chr21 34898740 rs4816460 C A 374.07 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=2;HaplotypeScore=0.0000;MQ=89.17;MQ0=0;QD=28.77;SB=-182.63;sumGLbyD=33.15 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:36,3,0 ./. ./. chr21 34900282 . C T 2849.48 PASS AC=1;AF=0.17;AN=6;DP=5;Dels=0.00;HRun=0;HaplotypeScore=0.4793;MQ=61.91;MQ0=0;QD=15.16;SB=-305.97;sumGLbyD=17.01 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,71 0/0:1,0:1:3.01:0,3,37 0/1:1,1:2:27.42:29,0,27 chr21 34900924 . G A 21137.72 PASS AC=3;AF=0.50;AN=6;DP=60;DS;Dels=0.01;HRun=14;HaplotypeScore=3.6600;MQ=72.94;MQ0=4;QD=7.33;SB=2525.02;sumGLbyD=4.64 GT:AD:DP:GQ:PL 0/1:30,17:18:89.80:90,0,376 0/1:23,22:22:99:186,0,322 0/1:26,18:20:77.57:78,0,350 chr21 34903895 . T A 201.08 PASS AC=1;AF=0.17;AN=6;DP=130;DS;Dels=0.00;HRun=7;HaplotypeScore=2.7735;MQ=68.78;MQ0=2;QD=0.95;SB=99.63;sumGLbyD=1.60 GT:AD:DP:GQ:PL 0/0:48,2:46:99:0,138,1531 0/1:34,6:39:86.25:86,0,971 0/0:49,1:45:99:0,135,1533 chr21 34915324 rs1041745 C G 107334.84 PASS AC=6;AF=1.00;AN=6;DB;DP=61;DS;Dels=0.00;HRun=1;HaplotypeScore=2.3234;MQ=63.64;MQ0=0;QD=29.91;SB=-12400.46;sumGLbyD=29.88 GT:AD:DP:GQ:PL 1/1:0,20:19:57.13:599,57,0 1/1:0,24:23:69.16:724,69,0 1/1:0,19:19:57.15:614,57,0 chr21 34915325 rs1041746 G C 113507.96 PASS AC=6;AF=1.00;AN=6;DB;DP=64;DS;Dels=0.00;HRun=3;HaplotypeScore=2.6314;MQ=63.96;MQ0=0;QD=31.23;SB=-13982.16;sumGLbyD=31.18 GT:AD:DP:GQ:PL 1/1:0,21:20:60.19:733,60,0 1/1:0,25:24:72.18:823,72,0 1/1:0,20:20:60.19:737,60,0 chr21 34919065 . C A 352.16 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0809;MQ=64.78;MQ0=0;QD=19.56;SB=-25.43;sumGLbyD=27.30 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:38,3,0 ./. ./. chr21 34924243 rs16990760 T C 22190.72 PASS AC=1;AF=0.17;AN=6;DB;DP=124;DS;Dels=0.00;HRun=0;HaplotypeScore=4.2536;MQ=69.46;MQ0=0;QD=16.91;SB=-6076.12;sumGLbyD=14.33 GT:AD:DP:GQ:PL 0/0:44,1:44:99:0,132,1556 0/0:40,0:37:99:0,108,1248 0/1:26,18:43:99:495,0,786 chr21 34925142 rs13433428 C T 150651.46 PASS AC=6;AF=1.00;AN=6;DB;DP=94;DS;Dels=0.00;HRun=1;HaplotypeScore=1.9401;MQ=67.15;MQ0=0;QD=33.02;SB=-74765.48;sumGLbyD=33.02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1321,114,0 1/1:0,23:23:63.18:741,63,0 1/1:0,32:32:93.27:1091,93,0 chr21 34925689 rs61739710 G A 19505.78 PASS AC=1;AF=0.17;AN=6;DB;DP=142;DS;Dels=0.00;HRun=0;HaplotypeScore=2.6893;MQ=70.25;MQ0=0;QD=16.09;SB=-7864.44;sumGLbyD=13.64 GT:AD:DP:GQ:PL 0/0:50,0:47:99:0,138,1641 0/0:49,0:47:99:0,138,1704 0/1:21,28:48:99:833,0,559 chr21 34926043 rs61743204 G A 41908.95 PASS AC=4;AF=0.67;AN=6;DB;DP=141;DS;Dels=0.00;HRun=0;HaplotypeScore=1.1892;MQ=73.53;MQ0=0;QD=21.80;SB=-19978.02;sumGLbyD=19.71 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1721,147,0 0/1:20,23:43:99:571,0,639 0/1:29,19:48:99:531,0,919 chr21 34926260 rs13047599 C T 86906.99 PASS AC=2;AF=0.33;AN=6;DB;DP=149;DS;Dels=0.00;HRun=0;HaplotypeScore=1.2969;MQ=77.75;MQ0=0;QD=28.05;SB=-38574.63;sumGLbyD=26.95 GT:AD:DP:GQ:PL 0/0:50,0:49:99:0,147,1744 0/1:26,24:50:99:670,0,776 0/1:28,22:50:99:623,0,871 chr21 34929096 rs12626839 A G 1521.95 PASS AC=4;AF=0.67;AN=6;DB;DP=4;Dels=0.00;HRun=0;HaplotypeScore=0.1621;MQ=69.21;MQ0=0;QD=19.77;SB=-148.57;sumGLbyD=24.29 GT:AD:DP:GQ:PL 0/1:0,2:1:1.76:32,3,0 1/1:0,2:2:3.01:45,3,0 0/1:0,1:1:1.76:32,3,0 chr21 34929255 rs56288237 T G 8688.77 PASS AC=3;AF=0.75;AN=4;DB;DP=4;Dels=0.00;HRun=0;HaplotypeScore=0.2716;MQ=61.10;MQ0=0;QD=22.39;SB=-1017.02;sumGLbyD=20.21 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:35,3,0 ./. 0/1:1,2:3:28.77:57,0,29 chr21 34929331 . C T 225.53 PASS AC=1;AF=0.17;AN=6;DP=14;DS;Dels=0.01;HRun=11;HaplotypeScore=1.0722;MQ=62.95;MQ0=0;QD=1.13;SB=78.93;sumGLbyD=2.14 GT:AD:DP:GQ:PL 0/0:8,0:5:15.03:0,15,155 0/0:4,1:4:12.02:0,12,119 0/1:6,4:5:33.36:33,0,88 chr21 34929422 rs2070389 T C 21330.77 PASS AC=1;AF=0.17;AN=6;DB;DP=113;DS;Dels=0.00;HRun=1;HaplotypeScore=1.1782;MQ=70.87;MQ0=0;QD=18.76;SB=-3616.60;sumGLbyD=16.21 GT:AD:DP:GQ:PL 0/0:43,0:42:99:0,123,1432 0/0:27,0:27:81.24:0,81,937 0/1:24,20:44:99:627,0,634 chr21 34939390 rs2834236 A G 23370.03 PASS AC=1;AF=0.17;AN=6;DB;DP=97;DS;Dels=0.00;HRun=0;HaplotypeScore=0.6353;MQ=70.78;MQ0=0;QD=21.70;SB=-2467.46;sumGLbyD=18.79 GT:AD:DP:GQ:PL 0/0:32,0:33:96.28:0,96,1120 0/0:26,0:26:75.22:0,75,877 0/1:22,17:38:99:527,0,612 chr21 34945721 rs3174808 T C 50272.22 PASS AC=4;AF=0.67;AN=6;DB;DP=150;DS;Dels=0.00;HRun=0;HaplotypeScore=1.2671;MQ=71.07;MQ0=13;QD=22.03;SB=-17746.59;sumGLbyD=19.86 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1841,150,0 0/1:24,26:50:99:805,0,675 0/1:33,17:50:99:479,0,1027 chr21 34947856 rs9978525 A C 56858.23 PASS AC=1;AF=0.17;AN=6;DB;DP=124;DS;Dels=0.00;HRun=0;HaplotypeScore=0.8548;MQ=73.96;MQ0=0;QD=24.07;SB=-9330.62;sumGLbyD=22.07 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,150,1693 0/1:14,11:25:99:314,0,387 0/0:49,0:49:99:0,147,1678 chr21 34948496 . A T 363.96 PASS AC=1;AF=0.17;AN=6;DP=8;Dels=0.00;HRun=1;HaplotypeScore=0.2069;MQ=45.13;MQ0=0;QD=2.25;SB=-84.62;sumGLbyD=3.91 GT:AD:DP:GQ:PL 0/1:2,4:4:53.90:54,0,55 0/0:3,0:3:9:0,9,93 0/0:1,1:1:3.01:0,3,35 chr21 34948498 . T A 178.34 PASS AC=1;AF=0.17;AN=6;DP=8;Dels=0.00;HRun=2;HaplotypeScore=0.2556;MQ=44.77;MQ0=0;QD=2.07;SB=-62.26;sumGLbyD=4.43 GT:AD:DP:GQ:PL 0/1:2,4:4:53.90:54,0,57 0/0:3,0:3:9.03:0,9,108 0/0:1,1:1:3.01:0,3,36 chr21 34948508 . C T 1052.73 PASS AC=2;AF=0.50;AN=4;DP=9;Dels=0.00;HRun=3;HaplotypeScore=0.9374;MQ=44.05;MQ0=0;QD=2.63;SB=-109.08;sumGLbyD=3.53 GT:AD:DP:GQ:PL 0/1:3,2:5:52.64:53,0,90 0/1:3,1:4:20.46:20,0,101 ./. chr21 34948512 . C T 525.58 PASS AC=1;AF=0.17;AN=6;DP=11;Dels=0.00;HRun=3;HaplotypeScore=1.2151;MQ=46.20;MQ0=0;QD=2.20;SB=66.16;sumGLbyD=3.51 GT:AD:DP:GQ:PL 0/1:5,1:5:17.46:17,0,125 0/0:5,0:5:15.05:0,15,179 0/0:1,1:1:3.01:0,3,36 chr21 34948684 . G A 204.61 PASS AC=3;AF=0.50;AN=6;DP=35;DS;Dels=0.00;HRun=1;HaplotypeScore=6.9782;MQ=57.81;MQ0=10;QD=0.84;SB=778.66;sumGLbyD=1.30 GT:AD:DP:GQ:PL 0/1:47,3:10:44.29:44,0,194 0/1:44,6:15:99:161,0,283 0/1:44,6:10:71.04:71,0,166 chr21 34948686 . G A 1012.96 PASS AC=3;AF=0.50;AN=6;DP=36;DS;Dels=0.00;HRun=1;HaplotypeScore=7.7147;MQ=57.38;MQ0=10;QD=0.85;SB=1016.19;sumGLbyD=1.11 GT:AD:DP:GQ:PL 0/1:7,43:11:99:148,0,165 0/1:11,38:14:66.26:66,0,353 0/1:9,41:11:59.01:59,0,155 chr21 34948687 . C G 476.88 PASS AC=3;AF=0.50;AN=6;DP=38;DS;Dels=0.00;HRun=1;HaplotypeScore=16.0314;MQ=57.47;MQ0=10;QD=0.91;SB=761.85;sumGLbyD=1.30 GT:AD:DP:GQ:PL 0/1:8,42:12:99:114,0,234 0/1:12,38:15:66.61:67,0,397 0/1:8,40:11:79.48:79,0,252 chr21 34948695 . A C 236.10 PASS AC=3;AF=0.50;AN=6;DP=38;DS;Dels=0.00;HRun=2;HaplotypeScore=11.4061;MQ=57.35;MQ0=10;QD=1.19;SB=80.04;sumGLbyD=1.72 GT:AD:DP:GQ:PL 0/1:8,42:13:99:147,0,228 0/1:12,37:15:66.58:67,0,396 0/1:7,40:10:80.81:81,0,228 chr21 34948696 . G A 394.69 PASS AC=3;AF=0.50;AN=6;DP=40;DS;Dels=0.00;HRun=1;HaplotypeScore=11.8457;MQ=57.62;MQ0=10;QD=1.97;SB=69.66;sumGLbyD=2.49 GT:AD:DP:GQ:PL 0/1:7,43:13:99:181,0,213 0/1:10,40:16:99:169,0,322 0/1:9,41:11:99:109,0,218 chr21 34948731 . T G 591.41 PASS AC=1;AF=0.17;AN=6;DP=146;DS;Dels=0.00;HRun=0;HaplotypeScore=1.8415;MQ=61.21;MQ0=10;QD=0.61;SB=854.55;sumGLbyD=0.91 GT:AD:DP:GQ:PL 0/0:46,4:50:0.11:0,0,1467 0/0:43,4:47:1.34:4,0,1354 0/1:46,4:49:6.90:7,0,1408 chr21 34954156 rs2834239 G A 22648.77 PASS AC=4;AF=0.67;AN=6;DB;DP=46;Dels=0.00;HRun=2;HaplotypeScore=0.4076;MQ=69.61;MQ0=0;QD=23.59;SB=-2852.61;sumGLbyD=21.27 GT:AD:DP:GQ:PL 1/1:0,19:19:57.16:668,57,0 0/1:3,6:9:83.50:191,0,84 0/1:9,9:18:99:278,0,283 chr21 34954170 rs62227710 A G 13229.76 PASS AC=1;AF=0.17;AN=6;DB;DP=56;DS;Dels=0.00;HRun=0;HaplotypeScore=0.4159;MQ=70.35;MQ0=0;QD=19.54;SB=-1203.08;sumGLbyD=16.76 GT:AD:DP:GQ:PL 0/0:24,0:24:72.21:0,72,832 0/0:11,0:11:33.10:0,33,380 0/1:11,10:21:99:319,0,331 chr21 34954782 rs17646111 G A 4264.21 PASS AC=2;AF=1.00;AN=2;DB;DP=1;DS;Dels=0.00;HRun=0;HaplotypeScore=0.0618;MQ=59.31;MQ0=0;QD=18.79;SB=-295.66;sumGLbyD=16.10 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:36,3,0 chr21 34959776 rs7283856 G A 71624.88 PASS AC=2;AF=0.33;AN=6;DB;DP=137;DS;Dels=0.00;HRun=8;HaplotypeScore=0.6440;MQ=80.74;MQ0=0;QD=28.67;SB=-8354.98;sumGLbyD=27.59 GT:AD:DP:GQ:PL 0/0:50,0:50:99:0,147,1862 0/1:16,24:40:99:712,0,471 0/1:19,28:47:99:847,0,589 chr21 34961965 rs1046312 A T 21440.80 PASS AC=1;AF=0.17;AN=6;DB;DP=13;Dels=0.00;HRun=0;HaplotypeScore=0.2591;MQ=64.05;MQ0=0;QD=25.59;SB=-794.13;sumGLbyD=23.42 GT:AD:DP:GQ:PL 0/0:6,0:6:18.06:0,18,225 0/1:1,1:2:30.11:33,0,30 0/0:5,0:5:15.05:0,15,186 chr21 34969152 rs3761350 C A 1112.02 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0213;MQ=69.02;MQ0=0;QD=27.80;SB=-219.15;sumGLbyD=32.43 GT:AD:DP:GQ:PL ./. 0/0:1,0:1:3.01:0,3,35 1/1:0,1:1:3.01:33,3,0 chr21 34969423 rs3761351 G A 18516.63 PASS AC=1;AF=0.17;AN=6;DB;DP=20;Dels=0.00;HRun=0;HaplotypeScore=0.9548;MQ=67.37;MQ0=1;QD=22.72;SB=-203.55;sumGLbyD=21.16 GT:AD:DP:GQ:PL 0/0:9,0:9:27.06:0,27,283 0/1:5,4:8:73.02:73,0,130 0/0:3,0:3:9.02:0,9,97 chr21 34970209 rs9975902 A C 383.47 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=79.73;MQ0=0;QD=31.96;SB=-192.87;sumGLbyD=36.89 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:35,3,0 ./. ./. chr21 34971155 rs1134132 C G 8352.26 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.9189;MQ=56.90;MQ0=0;QD=23.73;SB=-378.91;sumGLbyD=23.06 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,38 ./. 1/1:0,1:1:3.01:39,3,0 chr21 34973117 rs13046110 A G 104.69 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=116.97;MQ0=0;QD=26.17;SB=-34.01;sumGLbyD=36.94 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:39,3,0 chr21 34985754 rs2276226 T C 17625.98 PASS AC=1;AF=0.17;AN=6;DB;DP=118;DS;Dels=0.00;HRun=0;HaplotypeScore=1.1532;MQ=74.74;MQ0=0;QD=18.79;SB=-1872.54;sumGLbyD=16.03 GT:AD:DP:GQ:PL 0/0:48,0:48:99:0,144,1661 0/0:33,0:33:99:0,99,1154 0/1:16,22:37:99:620,0,462 chr21 34986862 rs6517183 G A 559.01 PASS AC=4;AF=1.00;AN=4;DB;DP=5;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=139.49;MQ0=0;QD=31.06;SB=-285.64;sumGLbyD=34.18 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:71,6,0 ./. 1/1:0,3:3:9.03:105,9,0 chr21 34993626 rs2409497 C A 230.54 PASS AC=2;AF=0.50;AN=4;DB;DP=3;Dels=0.00;HRun=13;HaplotypeScore=0.0000;MQ=112.10;MQ0=0;QD=19.21;SB=-65.63;sumGLbyD=24.61 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:74,6,0 ./. 0/0:1,0:1:3.01:0,3,38 chr21 35002285 rs2154503 A G 115.50 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=80.72;MQ0=0;QD=23.10;SB=-22.14;sumGLbyD=40.08 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:38,3,0 ./. ./. chr21 35018867 rs6517187 T C 193.50 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=117.27;MQ0=0;QD=32.25;SB=-39.24;sumGLbyD=40.31 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:39,3,0 ./. chr21 35020161 rs8134847 C T 280.57 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0997;MQ=94.27;MQ0=0;QD=28.06;SB=-101.89;sumGLbyD=34.85 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:36,3,0 ./. chr21 35025725 rs2834242 C T 304.36 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=2;HaplotypeScore=0.0000;MQ=101.83;MQ0=0;QD=33.82;SB=-119.40;sumGLbyD=39.65 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:37,3,0 ./. chr21 35027858 . G T 79.07 PASS AC=1;AF=0.50;AN=2;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0335;MQ=80.58;MQ0=0;QD=15.81;SB=-21.83;sumGLbyD=30.53 GT:AD:DP:GQ:PL 0/1:0,1:1:1.76:32,3,0 ./. ./. chr21 35029069 rs4817591 C T 576.91 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=84.75;MQ0=0;QD=33.94;SB=-266.88;sumGLbyD=37.91 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:35,3,0 chr21 35034251 rs2834243 G A 333.21 PASS AC=1;AF=0.50;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0693;MQ=83.98;MQ0=0;QD=25.63;SB=-130.00;sumGLbyD=31.58 GT:AD:DP:GQ:PL ./. ./. 0/1:1,0:1:1.76:0,3,35 chr21 35042415 rs7281204 A C 530.67 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=2;HaplotypeScore=0.0000;MQ=78.72;MQ0=0;QD=31.22;SB=-278.23;sumGLbyD=35.77 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:39,3,0 chr21 35052288 rs7277865 A C 156.58 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0427;MQ=109.12;MQ0=0;QD=19.57;SB=-30.53;sumGLbyD=28.82 GT:AD:DP:GQ:PL ./. ./. 1/1:0,2:2:6.02:74,6,0 chr21 35053004 rs58171609 A G 59.87 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=121.16;MQ0=0;QD=19.96;SB=-21.65;sumGLbyD=36.65 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:38,3,0 ./. chr21 35066836 rs7281625 A C 166.63 PASS AC=1;AF=0.50;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0853;MQ=85.92;MQ0=0;QD=27.77;SB=-62.26;sumGLbyD=40.14 GT:AD:DP:GQ:PL ./. ./. 0/1:0,1:1:1.76:35,3,0 chr21 35072003 . G A 81.66 PASS AC=4;AF=1.00;AN=4;DP=3;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=128.28;MQ0=0;QD=20.42;SB=-56.06;sumGLbyD=35.90 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:34,3,0 ./. 1/1:0,2:2:6.02:71,6,0 chr21 35073576 rs9984904 G T 319.63 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=5;HaplotypeScore=0.1043;MQ=86.01;MQ0=0;QD=26.64;SB=-143.95;sumGLbyD=31.20 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:37,3,0 ./. ./. chr21 35082206 rs7277684 A G 324.02 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=119.05;MQ0=0;QD=29.46;SB=-161.46;sumGLbyD=34.44 GT:AD:DP:GQ:PL ./. ./. 1/1:0,2:2:3.01:45,3,0 chr21 35090164 rs8133665 G A 71.84 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=122.56;MQ0=0;QD=23.95;SB=-31.70;sumGLbyD=37.29 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:33,3,0 chr21 35093008 rs8130945 G A 2973.01 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0349;MQ=70.73;MQ0=0;QD=38.61;SB=-458.14;sumGLbyD=40.36 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:74,6,0 ./. ./. chr21 35099700 rs2284562 G A 57.13 PASS AC=2;AF=0.50;AN=4;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=106.89;MQ0=0;QD=19.04;SB=-30.24;sumGLbyD=38.36 GT:AD:DP:GQ:PL 0/1:0,2:2:0.97:73,6,0 ./. 0/1:0,1:1:1.76:39,3,0 chr21 35110300 rs6517190 A C 358.99 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=86.68;MQ0=0;QD=29.92;SB=-157.12;sumGLbyD=34.25 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:39,3,0 ./. chr21 35121981 rs58777735 G A 633.88 PASS AC=1;AF=0.25;AN=4;DB;DP=2;Dels=0.00;HRun=2;HaplotypeScore=0.0235;MQ=69.17;MQ0=0;QD=24.38;SB=-20.36;sumGLbyD=32.66 GT:AD:DP:GQ:PL ./. 0/1:0,1:1:1.76:35,3,0 0/0:1,0:1:3.01:0,3,36 chr21 35122725 rs2276227 A G 18360.09 PASS AC=5;AF=0.83;AN=6;DB;DP=66;DS;Dels=0.00;HRun=0;HaplotypeScore=0.2462;MQ=76.36;MQ0=0;QD=23.63;SB=-1399.07;sumGLbyD=21.37 GT:AD:DP:GQ:PL 1/1:0,23:23:69.21:819,69,0 0/1:7,8:15:99:252,0,203 1/1:0,28:28:84.25:1006,84,0 chr21 35124253 rs2834255 A G 150819.71 PASS AC=6;AF=1.00;AN=6;DB;DP=119;DS;Dels=0.00;HRun=0;HaplotypeScore=1.1396;MQ=72.34;MQ0=0;QD=36.28;SB=-19243.22;sumGLbyD=36.26 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1450,123,0 1/1:0,33:32:96.29:1164,96,0 1/1:0,46:46:99:1680,138,0 chr21 35127735 rs2154434 C A 111581.80 PASS AC=5;AF=0.83;AN=6;DB;DP=131;DS;Dels=0.00;HRun=0;HaplotypeScore=0.5839;MQ=74.85;MQ0=1;QD=29.29;SB=-18009.62;sumGLbyD=28.22 GT:AD:DP:GQ:PL 1/1:1,43:42:99:1471,126,0 0/1:17,24:40:99:689,0,487 1/1:0,49:49:99:1701,144,0 chr21 35134557 rs7282455 G T 8644.09 PASS AC=2;AF=0.50;AN=4;DB;DP=7;Dels=0.00;HRun=1;HaplotypeScore=0.3546;MQ=61.96;MQ0=0;QD=22.69;SB=-509.86;sumGLbyD=20.54 GT:AD:DP:GQ:PL 1/1:0,5:5:12.04:156,12,0 0/0:2,0:2:6.02:0,6,74 ./. chr21 35134743 rs4816465 A T 1543.54 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=61.32;MQ0=0;QD=33.56;SB=-170.66;sumGLbyD=35.64 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:34,3,0 ./. chr21 35158483 rs8131555 G A 268.20 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=100.31;MQ0=0;QD=29.80;SB=-58.54;sumGLbyD=35.63 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:35,3,0 ./. ./. chr21 35161141 rs1892588 A G 252.93 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=96.75;MQ0=0;QD=31.62;SB=-117.19;sumGLbyD=37.89 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:34,3,0 chr21 35165161 rs2186281 A C 146.59 PASS AC=3;AF=0.75;AN=4;DB;DP=4;Dels=0.00;HRun=1;HaplotypeScore=0.1046;MQ=102.79;MQ0=0;QD=24.43;SB=2.64;sumGLbyD=36.66 GT:AD:DP:GQ:PL 0/1:0,2:2:0.97:63,6,0 ./. 1/1:0,2:2:6.02:76,6,0 chr21 35166803 rs2073368 G T 50865.56 PASS AC=5;AF=0.83;AN=6;DB;DP=141;DS;Dels=0.00;HRun=1;HaplotypeScore=0.9530;MQ=73.79;MQ0=0;QD=22.97;SB=-9318.14;sumGLbyD=20.74 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1786,147,0 0/1:24,17:41:99:460,0,739 1/1:0,50:50:99:1796,147,0 chr21 35166945 rs2073369 A G 15297.32 PASS AC=5;AF=0.83;AN=6;DB;DP=12;Dels=0.00;HRun=1;HaplotypeScore=0.3665;MQ=63.11;MQ0=0;QD=22.01;SB=-1040.38;sumGLbyD=19.85 GT:AD:DP:GQ:PL 1/1:0,3:3:9.03:113,9,0 0/1:1,1:2:29.23:29,0,31 1/1:0,7:7:21.07:263,21,0 chr21 35170525 rs9974890 T C 384.24 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=86.66;MQ0=0;QD=29.56;SB=-83.42;sumGLbyD=38.31 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:39,3,0 0/0:1,0:1:3.01:0,3,39 ./. chr21 35175094 rs9305533 C A 2788.83 PASS AC=1;AF=0.50;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0512;MQ=60.50;MQ0=0;QD=18.97;SB=-76.66;sumGLbyD=21.80 GT:AD:DP:GQ:PL ./. ./. 0/1:0,1:1:1.76:32,3,0 chr21 35188046 rs10222139 A G 1123.40 PASS AC=6;AF=1.00;AN=6;DB;DP=4;Dels=0.00;HRun=2;HaplotypeScore=0.0000;MQ=101.51;MQ0=0;QD=32.10;SB=-591.00;sumGLbyD=33.97 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:37,3,0 1/1:0,2:2:3.01:45,3,0 1/1:0,1:1:3.01:37,3,0 chr21 35188681 rs2268249 C T 546 PASS AC=2;AF=0.33;AN=6;DB;DP=4;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=113.43;MQ0=0;QD=24.82;SB=-222.92;sumGLbyD=29.40 GT:AD:DP:GQ:PL 0/0:2,0:2:6.02:0,6,76 1/1:0,1:1:3.01:35,3,0 0/0:1,0:1:3.01:0,3,37 chr21 35190802 rs2236613 T C 39545.73 PASS AC=5;AF=0.83;AN=6;DB;DP=148;DS;Dels=0.00;HRun=0;HaplotypeScore=0.6406;MQ=77.05;MQ0=0;QD=23.30;SB=-6225.52;sumGLbyD=21.03 GT:AD:DP:GQ:PL 1/1:0,50:49:99:1854,147,0 0/1:27,23:50:99:717,0,838 1/1:0,49:49:99:1761,141,0 chr21 35191847 rs2834265 A G 8302.68 PASS AC=2;AF=1.00;AN=2;DB;DP=1;DS;Dels=0.00;HRun=0;HaplotypeScore=0.0892;MQ=59.69;MQ0=0;QD=20.65;SB=-872.21;sumGLbyD=18.21 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:37,3,0 ./. chr21 35192765 rs9979906 T C 56.36 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.3524;MQ=98.65;MQ0=0;QD=11.27;SB=-29.00;sumGLbyD=21.83 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:37,3,0 chr21 35196568 rs2007477 A G 725.19 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=79.17;MQ0=0;QD=32.96;SB=-280.65;sumGLbyD=36.52 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:30,3,0 ./. chr21 35201281 rs2245099 G A 482.25 PASS AC=1;AF=0.50;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.4439;MQ=61.63;MQ0=0;QD=12.06;SB=-211.10;sumGLbyD=14.92 GT:AD:DP:GQ:PL ./. ./. 0/1:0,1:1:1.76:28,3,0 chr21 35204420 rs2834271 G A 521.38 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0475;MQ=94.93;MQ0=0;QD=28.97;SB=-287.53;sumGLbyD=32.58 GT:AD:DP:GQ:PL 1/1:0,1:1:3:28,3,0 1/1:0,1:1:3.01:33,3,0 ./. chr21 35205653 rs12483144 T C 58.92 PASS AC=1;AF=0.50;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0427;MQ=86.47;MQ0=0;QD=19.64;SB=-19.93;sumGLbyD=40.75 GT:AD:DP:GQ:PL ./. ./. 0/1:0,1:1:1.76:32,3,0 chr21 35206028 rs12483079 A G 56.86 PASS AC=1;AF=0.50;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.1873;MQ=76.58;MQ0=0;QD=18.95;SB=2.12;sumGLbyD=41.38 GT:AD:DP:GQ:PL ./. 0/1:0,1:1:1.76:38,3,0 ./. chr21 35206880 rs2248321 A G 52192.64 PASS AC=4;AF=1.00;AN=4;DB;DP=5;DS;Dels=0.00;HRun=0;HaplotypeScore=0.1623;MQ=52.88;MQ0=0;QD=25.56;SB=-5458.88;sumGLbyD=23.80 GT:AD:DP:GQ:PL 1/1:0,4:4:12.04:149,12,0 ./. 1/1:0,1:1:3.01:37,3,0 chr21 35207521 rs2834273 T G 161.34 PASS AC=1;AF=0.25;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0361;MQ=108.27;MQ0=0;QD=26.89;SB=-24.36;sumGLbyD=40.61 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,38 ./. 0/1:0,1:1:1.76:32,3,0 chr21 35208512 rs57360787 G A 4735.57 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.2263;MQ=59.41;MQ0=0;QD=20.95;SB=-477.86;sumGLbyD=18.57 GT:AD:DP:GQ:PL 0/0:1,0:1:3.01:0,3,33 ./. 1/1:0,1:1:3.01:39,3,0 chr21 35218517 rs4817596 G T 336.53 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.1789;MQ=68.63;MQ0=0;QD=21.03;SB=-141.73;sumGLbyD=28.21 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:36,3,0 ./. ./. chr21 35219895 rs3787715 G C 291.09 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0859;MQ=93.51;MQ0=0;QD=26.46;SB=-135.25;sumGLbyD=35.45 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:39,3,0 ./. 1/1:0,1:1:3.01:38,3,0 chr21 35220001 rs2834278 C T 110.48 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.1893;MQ=81.66;MQ0=0;QD=22.10;SB=-50.82;sumGLbyD=36.39 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:35,3,0 ./. ./. chr21 35226261 rs2268255 A C 294.39 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0313;MQ=76.27;MQ0=0;QD=21.03;SB=-159.46;sumGLbyD=27.61 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:32,3,0 ./. chr21 35228148 rs9305534 T C 335.88 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=85.79;MQ0=0;QD=33.59;SB=-181.30;sumGLbyD=40.39 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:36,3,0 ./. chr21 35228953 rs9305535 A G 101730.16 PASS AC=5;AF=0.83;AN=6;DB;DP=36;DS;Dels=0.00;HRun=2;HaplotypeScore=2.7295;MQ=63.18;MQ0=0;QD=30.23;SB=-4676.81;sumGLbyD=29.54 GT:AD:DP:GQ:PL 1/1:0,19:19:57.18:699,57,0 0/1:2,2:4:59.34:64,0,59 1/1:0,13:13:39.12:476,39,0 chr21 35229568 rs1109847 T C 990.73 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.2339;MQ=55.06;MQ0=0;QD=24.16;SB=-503.01;sumGLbyD=27.53 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:35,3,0 chr21 35229675 rs1109849 C G 448.03 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.1552;MQ=64.43;MQ0=0;QD=21.33;SB=-58.39;sumGLbyD=28.93 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:37,3,0 chr21 35229893 rs1109850 C A 163.22 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=85.61;MQ0=0;QD=27.20;SB=-64.71;sumGLbyD=40.63 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:36,3,0 chr21 35230418 rs882363 G A 854.62 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.1055;MQ=79.37;MQ0=0;QD=28.49;SB=-366.91;sumGLbyD=32.73 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:37,3,0 ./. 1/1:0,1:1:3.01:36,3,0 chr21 35230780 . G A 16745.65 PASS AC=2;AF=1.00;AN=2;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.8098;MQ=58.20;MQ0=0;QD=22.24;SB=-722.93;sumGLbyD=20.04 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:70,6,0 ./. ./. chr21 35230921 rs2073366 G C 66806.40 PASS AC=4;AF=0.67;AN=6;DB;DP=62;DS;Dels=0.00;HRun=0;HaplotypeScore=1.6761;MQ=66.08;MQ0=0;QD=22.37;SB=-10349.51;sumGLbyD=20.24 GT:AD:DP:GQ:PL 1/1:0,24:21:60.19:741,60,0 0/1:6,11:16:99:347,0,140 0/1:14,12:25:99:329,0,450 chr21 35231264 rs1888449 G A 46223.08 PASS AC=4;AF=1.00;AN=4;DB;DP=4;DS;Dels=0.00;HRun=0;HaplotypeScore=0.3352;MQ=59.52;MQ0=0;QD=31.72;SB=-3786.74;sumGLbyD=30.95 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:66,6,0 ./. 1/1:0,2:2:6.02:69,6,0 chr21 35231353 rs9977675 T C 6922.38 PASS AC=1;AF=0.50;AN=2;DB;DP=1;Dels=0.01;HRun=0;HaplotypeScore=0.5073;MQ=58.18;MQ0=0;QD=22.92;SB=-332.87;sumGLbyD=21.03 GT:AD:DP:GQ:PL 0/1:1,0:1:1.76:0,3,33 ./. ./. chr21 35232200 rs16990975 G A 142.07 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0828;MQ=74.86;MQ0=0;QD=17.76;SB=-13.30;sumGLbyD=28.96 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:35,3,0 ./. ./. chr21 35233517 rs1475848 G C 553.62 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.2125;MQ=77.52;MQ0=0;QD=25.16;SB=-246.79;sumGLbyD=28.93 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:32,3,0 chr21 35233984 rs13047166 C A 350.31 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.1408;MQ=79.88;MQ0=1;QD=29.19;SB=-183.09;sumGLbyD=33.94 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:37,3,0 ./. ./. chr21 35234284 rs12626378 G C 277.39 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=43.54;MQ0=0;QD=30.82;SB=-40.68;sumGLbyD=36.34 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:32,3,0 chr21 35234580 rs2834283 C T 220.88 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=98.92;MQ0=0;QD=27.61;SB=-116.72;sumGLbyD=37.63 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:66,6,0 ./. ./. chr21 35236467 rs2268257 A G 159.41 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.1279;MQ=81.90;MQ0=0;QD=26.57;SB=-21.36;sumGLbyD=40.73 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:38,3,0 ./. ./. chr21 35237349 rs9984732 A G 111328.75 PASS AC=6;AF=1.00;AN=6;DB;DP=11;DS;Dels=0.00;HRun=0;HaplotypeScore=1.6505;MQ=55.39;MQ0=0;QD=32.05;SB=-17112.84;sumGLbyD=31.53 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:72,6,0 1/1:0,3:3:9.02:97,9,0 1/1:0,6:6:15.05:194,15,0 chr21 35237608 rs9976801 T C 87785.31 PASS AC=5;AF=0.83;AN=6;DB;DP=15;DS;Dels=0.00;HRun=0;HaplotypeScore=1.8594;MQ=52.90;MQ0=0;QD=27.25;SB=-16580.79;sumGLbyD=26.77 GT:AD:DP:GQ:PL 1/1:0,8:7:21.06:237,21,0 0/1:2,2:4:53.87:54,0,57 1/1:0,4:4:12.03:133,12,0 chr21 35237843 rs743315 A G 18863.78 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.2404;MQ=55.99;MQ0=0;QD=32.25;SB=-913.24;sumGLbyD=31.94 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:35,3,0 ./. ./. chr21 35239405 rs2070394 A T 34440.75 PASS AC=4;AF=0.67;AN=6;DB;DP=18;DS;Dels=0.00;HRun=0;HaplotypeScore=0.8077;MQ=62.22;MQ0=0;QD=21.47;SB=-4189.60;sumGLbyD=19.28 GT:AD:DP:GQ:PL 1/1:0,5:5:15.04:160,15,0 0/1:5,3:8:75.23:75,0,151 0/1:3,2:5:50.89:51,0,97 chr21 35242393 rs762186 A T 285.99 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=112.38;MQ0=0;QD=28.60;SB=-168.64;sumGLbyD=34.14 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:3.01:45,3,0 ./. chr21 35242490 rs762187 G A 130.78 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=2;HaplotypeScore=0.1452;MQ=109.12;MQ0=0;QD=21.80;SB=-61.41;sumGLbyD=33.43 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:37,3,0 0/0:1,0:1:3.01:0,3,35 ./. chr21 35242501 rs4143360 A G 232.90 PASS AC=3;AF=0.75;AN=4;DB;DP=4;Dels=0.00;HRun=0;HaplotypeScore=0.0894;MQ=135.96;MQ0=0;QD=23.29;SB=-97.73;sumGLbyD=30.95 GT:AD:DP:GQ:PL 1/1:0,2:2:6.02:74,6,0 0/1:1,1:2:30.11:32,0,30 ./. chr21 35246482 . A G 147.87 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.8716;MQ=72.78;MQ0=0;QD=18.48;SB=-59.31;sumGLbyD=26.29 GT:AD:DP:GQ:PL 1/1:0,1:1:3.01:35,3,0 ./. ./. chr21 35246923 rs9983762 C T 229.65 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.3646;MQ=81.63;MQ0=0;QD=22.97;SB=-126.45;sumGLbyD=31.32 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:38,3,0 ./. chr21 35247611 rs2298681 G A 76417.43 PASS AC=4;AF=0.67;AN=6;DB;DP=61;DS;Dels=0.00;HRun=0;HaplotypeScore=2.4186;MQ=63.76;MQ0=0;QD=22.52;SB=-17051.66;sumGLbyD=21.00 GT:AD:DP:GQ:PL 1/1:0,19:18:54.14:630,54,0 0/1:8,5:12:99:105,0,207 0/1:14,20:31:99:578,0,262 chr21 35247873 rs933130 C G 29813.73 PASS AC=4;AF=0.67;AN=6;DB;DP=23;DS;Dels=0.00;HRun=1;HaplotypeScore=1.3732;MQ=56.42;MQ0=0;QD=21.99;SB=-3222.86;sumGLbyD=20.48 GT:AD:DP:GQ:PL 1/1:0,7:6:18.05:213,18,0 0/1:2,4:5:47.45:80,0,47 0/1:7,6:12:99:192,0,185 chr21 35247918 . T C 1903.18 PASS AC=1;AF=0.17;AN=6;DP=7;DS;Dels=0.00;HRun=4;HaplotypeScore=1.9522;MQ=52.19;MQ0=0;QD=3.69;SB=450.79;sumGLbyD=4.37 GT:AD:DP:GQ:PL 0/0:5,0:5:15.03:0,15,156 0/0:2,0:1:3.01:0,3,35 0/1:3,0:1:1.76:0,3,32 chr21 35248519 . C T 187.35 PASS AC=2;AF=0.33;AN=6;DP=5;Dels=0.03;HRun=5;HaplotypeScore=0.5396;MQ=110.89;MQ0=1;QD=13.38;SB=-22.74;sumGLbyD=19.66 GT:AD:DP:GQ:PL 1/1:0,2:1:3.01:36,3,0 0/0:2,0:2:6.01:0,6,64 0/0:2,0:2:6.02:0,6,75 chr21 35248523 . T C 161.31 PASS AC=1;AF=0.17;AN=6;DP=4;Dels=0.00;HRun=0;HaplotypeScore=0.5083;MQ=110.93;MQ0=0;QD=17.92;SB=-21.79;sumGLbyD=27.50 GT:AD:DP:GQ:PL 0/1:0,2:1:1.76:35,3,0 0/0:2,0:1:3.01:0,3,33 0/0:2,0:2:6.02:0,6,71 chr21 35249378 rs4817598 A G 90.97 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=129.46;MQ0=0;QD=22.74;SB=-25.44;sumGLbyD=33.51 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3:27,3,0 ./. chr21 35250726 rs2243871 G C 229.60 PASS AC=1;AF=0.25;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=96.96;MQ0=0;QD=28.70;SB=-95.32;sumGLbyD=39.79 GT:AD:DP:GQ:PL 0/1:0,1:1:1.76:36,3,0 0/0:1,0:1:3.01:0,3,37 ./. chr21 35254142 . T C 131.21 PASS AC=2;AF=0.50;AN=4;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0232;MQ=73.00;MQ0=0;QD=18.74;SB=-63.01;sumGLbyD=35.18 GT:AD:DP:GQ:PL 0/1:0,1:1:1.76:39,3,0 ./. 0/1:0,1:1:1.76:36,3,0 chr21 35254287 rs9978363 G A 15547.63 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=1.6208;MQ=54.64;MQ0=0;QD=28.58;SB=-1170.20;sumGLbyD=28.33 GT:AD:DP:GQ:PL ./. ./. 1/1:0,1:1:3.01:35,3,0 chr21 35255539 rs7282518 T C 10240.66 PASS AC=4;AF=1.00;AN=4;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.2210;MQ=62.07;MQ0=0;QD=33.14;SB=-861.65;sumGLbyD=33.12 GT:AD:DP:GQ:PL ./. 1/1:0,2:2:3.01:45,3,0 1/1:0,1:1:2.99:24,3,0 chr21 35260481 rs2073370 T C 108669.53 PASS AC=4;AF=0.67;AN=6;DB;DP=121;DS;Dels=0.00;HRun=0;HaplotypeScore=2.5150;MQ=70.14;MQ0=0;QD=24.60;SB=-48638.68;sumGLbyD=23.39 GT:AD:DP:GQ:PL 1/1:0,45:43:99:1349,120,0 0/1:18,16:31:99:420,0,450 0/1:21,27:47:99:767,0,560 chr21 35264397 rs2834288 A G 133.48 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=2;HaplotypeScore=0.1998;MQ=109.12;MQ0=0;QD=26.70;SB=-56.00;sumGLbyD=36.70 GT:AD:DP:GQ:PL ./. 1/1:0,1:1:3.01:32,3,0 ./. chr17 10544634 rs2073371 C T 108669.53 PASS AC=4;AF=0.67;AN=6;DB;DP=121;DS;Dels=0.00;HRun=0;HaplotypeScore=2.5150;MQ=70.14;MQ0=0;QD=24.60;SB=-48638.68;sumGLbyD=23.39 GT:AD:DP:GQ:PL 1/1:0,47:47:99:767,560,0 0/1:18,16:31:99:420,0,450 0/1:18,16:31:99:420,0,450 chr17 10450039 rs8075891 C T 197.1 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=89.11;MQ0=0;QD=24.64;SB=-130.00;sumGLbyD=32.92 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,451 0/1:18,16:31:99:420,0,451 0/0:47,0:47:99:767,0,561 chr17 10450816 rs12600539 T C 145833.82 PASS AC=6;AF=1.00;AN=6;DB;DP=147;DS;Dels=0.00;HRun=0;HaplotypeScore=3.3987;MQ=70.99;MQ0=0;QD=28.58;SB=-64777.95;sumGLbyD=27.92 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,452 0/1:18,16:31:99:420,0,452 0/0:47,0:47:99:767,0,562 chr17 10452313 rs3760431 A G 203.33 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.1578;MQ=110.92;MQ0=0;QD=29.05;SB=-113.41;sumGLbyD=35.96 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,453 0/1:18,16:31:99:420,0,453 0/0:47,0:47:99:767,0,563 chr17 10453015 . T C 55.25 PASS AC=1;AF=0.25;AN=4;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0789;MQ=109.12;MQ0=0;QD=18.42;SB=7.72;sumGLbyD=38.70 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,454 0/1:18,16:31:99:420,0,454 0/0:47,0:47:99:767,0,564 chr17 10456001 rs4792001 A G 391.7 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=121.14;MQ0=0;QD=35.61;SB=-112.13;sumGLbyD=41.04 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,455 0/1:18,16:31:99:420,0,455 0/0:47,0:47:99:767,0,565 chr17 10457739 rs4792003 A G 451.44 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.1723;MQ=104.42;MQ0=0;QD=30.10;SB=-74.60;sumGLbyD=34.64 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,456 0/1:18,16:31:99:420,0,456 0/0:47,0:47:99:767,0,566 chr17 10459982 rs4792005 T G 595.63 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0667;MQ=96.96;MQ0=0;QD=31.35;SB=-270.51;sumGLbyD=35.54 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,457 0/1:18,16:31:99:420,0,457 0/0:47,0:47:99:767,0,567 chr17 10481682 rs1266159 A G 428.46 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.2336;MQ=78.17;MQ0=0;QD=32.96;SB=-139.80;sumGLbyD=38.53 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,458 0/1:18,16:31:99:420,0,458 0/0:47,0:47:99:767,0,568 chr17 10505354 rs1006727 G A 345.47 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=94.27;MQ0=0;QD=31.41;SB=-72.24;sumGLbyD=36.84 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,459 0/1:18,16:31:99:420,0,459 0/0:47,0:47:99:767,0,569 chr17 10516445 rs169314 C T 595.33 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=81.52;MQ0=0;QD=31.33;SB=-304.53;sumGLbyD=35.62 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,460 0/1:18,16:31:99:420,0,460 0/0:47,0:47:99:767,0,570 chr17 10518031 . C T 58.87 PASS AC=1;AF=0.25;AN=4;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=100.30;MQ0=0;QD=14.72;SB=-36.28;sumGLbyD=31.21 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,461 0/1:18,16:31:99:420,0,461 0/0:47,0:47:99:767,0,571 chr17 10518085 . G C 51.74 PASS AC=1;AF=0.25;AN=4;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=102.82;MQ0=0;QD=17.25;SB=-24.23;sumGLbyD=39.10 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,462 0/1:18,16:31:99:420,0,462 0/0:47,0:47:99:767,0,572 chr17 10518956 rs188010 T C 123.12 PASS AC=2;AF=0.50;AN=4;DB;DP=3;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=116.62;MQ0=0;QD=24.62;SB=-56.21;sumGLbyD=39.62 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,463 0/1:18,16:31:99:420,0,463 0/0:47,0:47:99:767,0,573 chr17 10519785 rs201624 C T 213.93 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=48.42;MQ0=0;QD=23.77;SB=-58.76;sumGLbyD=33.52 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,464 0/1:18,16:31:99:420,0,464 0/0:47,0:47:99:767,0,574 chr17 10521781 rs9890945 C A 129.92 PASS AC=1;AF=0.25;AN=4;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.1791;MQ=98.75;MQ0=0;QD=16.24;SB=-54.78;sumGLbyD=28.67 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,465 0/1:18,16:31:99:420,0,465 0/0:47,0:47:99:767,0,575 chr17 10522717 rs201602 G C 219.79 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=3;HaplotypeScore=0.1122;MQ=73.28;MQ0=1;QD=21.98;SB=-124.71;sumGLbyD=30.39 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,466 0/1:18,16:31:99:420,0,466 0/0:47,0:47:99:767,0,576 chr17 10531250 rs6503315 T C 137.59 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=105.90;MQ0=0;QD=22.93;SB=-50.16;sumGLbyD=36.33 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,467 0/1:18,16:31:99:420,0,467 0/0:47,0:47:99:767,0,577 chr17 10532884 rs12940161 G A 46829.37 PASS AC=3;AF=0.50;AN=6;DB;DP=128;DS;Dels=0.00;HRun=0;HaplotypeScore=1.7895;MQ=80.55;MQ0=0;QD=22.82;SB=-9341.90;sumGLbyD=21.18 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,468 0/1:18,16:31:99:420,0,468 0/0:47,0:47:99:767,0,578 chr17 10534520 rs201595 A G 4023.21 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0481;MQ=60.98;MQ0=0;QD=37.25;SB=-521.32;sumGLbyD=38.15 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,469 0/1:18,16:31:99:420,0,469 0/0:47,0:47:99:767,0,579 chr17 10535349 rs2239936 C G 41834.37 PASS AC=3;AF=0.50;AN=6;DB;DP=34;DS;Dels=0.00;HRun=1;HaplotypeScore=2.1245;MQ=56.21;MQ0=1;QD=18.86;SB=-7584.05;sumGLbyD=17.37 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,470 0/1:18,16:31:99:420,0,470 0/0:47,0:47:99:767,0,580 chr17 10535761 rs4792008 G A 36331.94 PASS AC=3;AF=0.50;AN=6;DB;DP=76;DS;Dels=0.00;HRun=1;HaplotypeScore=1.4053;MQ=71.48;MQ0=0;QD=19.38;SB=-6954.45;sumGLbyD=17.24 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,471 0/1:18,16:31:99:420,0,471 0/0:47,0:47:99:767,0,581 chr17 10536018 rs2285479 G A 48363.36 PASS AC=3;AF=0.50;AN=6;DB;DP=49;DS;Dels=0.00;HRun=1;HaplotypeScore=1.7469;MQ=64.40;MQ0=0;QD=20.13;SB=-17477.36;sumGLbyD=18.06 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,472 0/1:18,16:31:99:420,0,472 0/0:47,0:47:99:767,0,582 chr17 10536184 rs2285478 A G 16795.5 PASS AC=3;AF=0.50;AN=6;DB;DP=21;Dels=0.00;HRun=0;HaplotypeScore=0.3038;MQ=66.25;MQ0=0;QD=21.29;SB=-1101.97;sumGLbyD=19.06 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,473 0/1:18,16:31:99:420,0,473 0/0:47,0:47:99:767,0,583 chr17 10536235 rs1981514 T C 9078.21 PASS AC=2;AF=0.50;AN=4;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.2536;MQ=60.34;MQ0=0;QD=21.21;SB=-446.33;sumGLbyD=19.06 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,474 0/1:18,16:31:99:420,0,474 0/0:47,0:47:99:767,0,584 chr17 10541515 rs2285477 C T 44298.69 PASS AC=3;AF=0.50;AN=6;DB;DP=55;DS;Dels=0.00;HRun=0;HaplotypeScore=3.6959;MQ=60.25;MQ0=0;QD=17.72;SB=-17235.44;sumGLbyD=15.93 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,475 0/1:18,16:31:99:420,0,475 0/0:47,0:47:99:767,0,585 chr17 10541741 rs201626 A G 10319.2 PASS AC=3;AF=0.50;AN=6;DB;DP=15;Dels=0.00;HRun=0;HaplotypeScore=1.6492;MQ=65.53;MQ0=0;QD=18.26;SB=-3550.59;sumGLbyD=17.33 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,476 0/1:18,16:31:99:420,0,476 0/0:47,0:47:99:767,0,586 chr17 10541892 rs2285476 G T 7452.65 PASS AC=2;AF=0.50;AN=4;DB;DP=5;Dels=0.00;HRun=0;HaplotypeScore=0.2599;MQ=61.88;MQ0=0;QD=21.79;SB=-2967.62;sumGLbyD=19.74 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,477 0/1:18,16:31:99:420,0,477 0/0:47,0:47:99:767,0,587 chr17 10542471 rs2285475 T G 52855.73 PASS AC=3;AF=0.50;AN=6;DB;DP=148;DS;Dels=0.00;HRun=0;HaplotypeScore=0.9887;MQ=73.97;MQ0=0;QD=19.69;SB=-19634.88;sumGLbyD=17.51 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,478 0/1:18,16:31:99:420,0,478 0/0:47,0:47:99:767,0,588 chr17 10542765 rs2285474 A G 49349.66 PASS AC=3;AF=0.50;AN=6;DB;DP=141;DS;Dels=0.00;HRun=1;HaplotypeScore=1.0928;MQ=75.30;MQ0=0;QD=20.72;SB=-20400.05;sumGLbyD=18.57 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,479 0/1:18,16:31:99:420,0,479 0/0:47,0:47:99:767,0,589 chr17 10542803 rs2285473 T C 55252.05 PASS AC=3;AF=0.50;AN=6;DB;DP=149;DS;Dels=0.00;HRun=1;HaplotypeScore=1.2211;MQ=75.63;MQ0=0;QD=22.38;SB=-18365.57;sumGLbyD=20.26 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,480 0/1:18,16:31:99:420,0,480 0/0:47,0:47:99:767,0,590 chr17 10542886 rs2285472 T C 66106.97 PASS AC=3;AF=0.50;AN=6;DB;DP=150;DS;Dels=0.00;HRun=1;HaplotypeScore=1.3271;MQ=72.85;MQ0=0;QD=21.58;SB=-23022.45;sumGLbyD=19.50 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,481 0/1:18,16:31:99:420,0,481 0/0:47,0:47:99:767,0,591 chr17 10543183 rs2285471 A G 35988.16 PASS AC=3;AF=0.50;AN=6;DB;DP=113;DS;Dels=0.00;HRun=0;HaplotypeScore=0.5437;MQ=76.58;MQ0=0;QD=21.33;SB=-16167.61;sumGLbyD=19.17 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,482 0/1:18,16:31:99:420,0,482 0/0:47,0:47:99:767,0,592 chr17 10543218 rs2285470 A G 39243.16 PASS AC=3;AF=0.50;AN=6;DB;DP=109;DS;Dels=0.00;HRun=0;HaplotypeScore=0.9672;MQ=75.79;MQ0=0;QD=23.44;SB=-13939.83;sumGLbyD=21.31 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,483 0/1:18,16:31:99:420,0,483 0/0:47,0:47:99:767,0,593 chr17 10543463 rs2285469 T C 64998.49 PASS AC=3;AF=0.50;AN=6;DB;DP=141;DS;Dels=0.00;HRun=1;HaplotypeScore=1.7739;MQ=70.97;MQ0=2;QD=20.66;SB=-28208.35;sumGLbyD=18.58 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,484 0/1:18,16:31:99:420,0,484 0/0:47,0:47:99:767,0,594 chr17 10544018 rs876660 T C 46625.29 PASS AC=3;AF=0.50;AN=6;DB;DP=82;DS;Dels=0.00;HRun=0;HaplotypeScore=0.8590;MQ=68.97;MQ0=0;QD=20.06;SB=-13005.29;sumGLbyD=17.92 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,485 0/1:18,16:31:99:420,0,485 0/0:47,0:47:99:767,0,595 chr17 10544129 rs876658 C T 20638.71 PASS AC=3;AF=0.50;AN=6;DB;DP=10;DS;Dels=0.00;HRun=1;HaplotypeScore=0.8488;MQ=61.12;MQ0=0;QD=19.04;SB=-4630.88;sumGLbyD=16.93 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,486 0/1:18,16:31:99:420,0,486 0/0:47,0:47:99:767,0,596 chr17 10544416 rs876657 G T 55741.85 PASS AC=3;AF=0.50;AN=6;DB;DP=148;DS;Dels=0.00;HRun=0;HaplotypeScore=1.1838;MQ=73.14;MQ0=0;QD=20.16;SB=-16374.13;sumGLbyD=18.04 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,487 0/1:18,16:31:99:420,0,487 0/0:47,0:47:99:767,0,597 chr17 10544812 rs2016193 G T 11815.04 PASS AC=3;AF=0.50;AN=6;DB;DP=15;DS;Dels=0.01;HRun=1;HaplotypeScore=4.8342;MQ=58.43;MQ0=0;QD=18.58;SB=-395.29;sumGLbyD=16.83 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,488 0/1:18,16:31:99:420,0,488 0/0:47,0:47:99:767,0,598 chr17 10546130 rs2285468 T G 65061.84 PASS AC=3;AF=0.50;AN=6;DB;DP=135;DS;Dels=0.00;HRun=2;HaplotypeScore=5.6053;MQ=64.51;MQ0=0;QD=20.16;SB=-24305.26;sumGLbyD=18.47 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,489 0/1:18,16:31:99:420,0,489 0/0:47,0:47:99:767,0,599 chr17 10547074 rs16943591 A C 185.13 PASS AC=2;AF=0.50;AN=4;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=112.25;MQ0=0;QD=20.57;SB=-101.81;sumGLbyD=29.62 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,490 0/1:18,16:31:99:420,0,490 0/0:47,0:47:99:767,0,600 chr17 10547219 rs2040569 G T 436.77 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0576;MQ=74.15;MQ0=0;QD=24.27;SB=-100.49;sumGLbyD=33.51 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,491 0/1:18,16:31:99:420,0,491 0/0:47,0:47:99:767,0,601 chr17 10548184 rs2239935 T C 15812.43 PASS AC=4;AF=0.67;AN=6;DB;DP=8;DS;Dels=0.00;HRun=0;HaplotypeScore=0.2528;MQ=61.23;MQ0=0;QD=21.17;SB=-998.72;sumGLbyD=19.00 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,492 0/1:18,16:31:99:420,0,492 0/0:47,0:47:99:767,0,602 chr17 10548992 rs2239934 C T 39720.61 PASS AC=3;AF=0.50;AN=6;DB;DP=26;DS;Dels=0.00;HRun=0;HaplotypeScore=1.4279;MQ=62.06;MQ0=0;QD=22.30;SB=-4821.61;sumGLbyD=20.20 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,493 0/1:18,16:31:99:420,0,493 0/0:47,0:47:99:767,0,603 chr17 10549184 rs2239933 G A 50155.61 PASS AC=3;AF=0.50;AN=6;DB;DP=64;DS;Dels=0.00;HRun=0;HaplotypeScore=2.1348;MQ=64.94;MQ0=0;QD=20.21;SB=-22006.66;sumGLbyD=18.16 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,494 0/1:18,16:31:99:420,0,494 0/0:47,0:47:99:767,0,604 chr17 10553046 rs1989810 A G 45013.13 PASS AC=3;AF=0.50;AN=6;DB;DP=120;DS;Dels=0.00;HRun=1;HaplotypeScore=0.9843;MQ=74.96;MQ0=0;QD=23.01;SB=-6396.55;sumGLbyD=20.86 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,495 0/1:18,16:31:99:420,0,495 0/0:47,0:47:99:767,0,605 chr17 10553937 rs3785938 A G 10433.28 PASS AC=1;AF=0.50;AN=2;DB;DP=4;Dels=0.00;HRun=0;HaplotypeScore=0.2034;MQ=61.56;MQ0=0;QD=21.92;SB=-327.31;sumGLbyD=19.56 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,496 0/1:18,16:31:99:420,0,496 0/0:47,0:47:99:767,0,606 chr17 10554194 rs7209483 G T 366.57 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0838;MQ=90.73;MQ0=0;QD=19.29;SB=-159.36;sumGLbyD=25.97 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,497 0/1:18,16:31:99:420,0,497 0/0:47,0:47:99:767,0,607 chr17 10555021 rs2285467 T C 4776.64 PASS AC=1;AF=0.17;AN=6;DB;DP=110;DS;Dels=0.00;HRun=0;HaplotypeScore=4.6380;MQ=70.42;MQ0=0;QD=14.26;SB=-363.53;sumGLbyD=11.95 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,498 0/1:18,16:31:99:420,0,498 0/0:47,0:47:99:767,0,608 chr17 10555028 rs2285466 G A 35745.49 PASS AC=3;AF=0.50;AN=6;DB;DP=91;DS;Dels=0.00;HRun=0;HaplotypeScore=4.2836;MQ=69.53;MQ0=0;QD=18.09;SB=-2884.99;sumGLbyD=16.08 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,499 0/1:18,16:31:99:420,0,499 0/0:47,0:47:99:767,0,609 chr17 10555526 rs2285464 C T 7384.98 PASS AC=3;AF=0.75;AN=4;DB;DP=4;Dels=0.00;HRun=0;HaplotypeScore=0.3159;MQ=59.97;MQ0=0;QD=21.28;SB=-666.78;sumGLbyD=19.16 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,500 0/1:18,16:31:99:420,0,500 0/0:47,0:47:99:767,0,610 chr17 10555602 rs2285463 G A 15787.69 PASS AC=2;AF=0.33;AN=6;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.3706;MQ=54.91;MQ0=0;QD=18.84;SB=-1978.46;sumGLbyD=16.71 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,501 0/1:18,16:31:99:420,0,501 0/0:47,0:47:99:767,0,611 chr17 10557103 rs3815009 G A 102.57 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.2213;MQ=84.04;MQ0=0;QD=14.65;SB=-21.79;sumGLbyD=24.19 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,502 0/1:18,16:31:99:420,0,502 0/0:47,0:47:99:767,0,612 chr17 10557466 rs3815008 T C 177.74 PASS AC=3;AF=0.50;AN=6;DB;DP=6;Dels=0.00;HRun=0;HaplotypeScore=0.1332;MQ=105.22;MQ0=0;QD=19.75;SB=-22.96;sumGLbyD=30.91 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,503 0/1:18,16:31:99:420,0,503 0/0:47,0:47:99:767,0,613 chr17 10557468 rs3815007 C T 180.52 PASS AC=3;AF=0.50;AN=6;DB;DP=6;Dels=0.00;HRun=3;HaplotypeScore=0.0667;MQ=105.22;MQ0=0;QD=20.06;SB=-22.87;sumGLbyD=31.19 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,504 0/1:18,16:31:99:420,0,504 0/0:47,0:47:99:767,0,614 chr17 10557561 rs3815006 T C 263.9 PASS AC=2;AF=0.33;AN=6;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=93.09;MQ0=0;QD=20.30;SB=-110.19;sumGLbyD=29.21 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,505 0/1:18,16:31:99:420,0,505 0/0:47,0:47:99:767,0,615 chr17 10557595 rs3815005 T A 485.51 PASS AC=2;AF=0.33;AN=6;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.0293;MQ=86.32;MQ0=0;QD=25.55;SB=-84.24;sumGLbyD=34.33 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,506 0/1:18,16:31:99:420,0,506 0/0:47,0:47:99:767,0,616 chr17 10560227 rs201616 T C 452.25 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=4;HaplotypeScore=0.0000;MQ=83.98;MQ0=0;QD=30.15;SB=-227.96;sumGLbyD=34.11 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,507 0/1:18,16:31:99:420,0,507 0/0:47,0:47:99:767,0,617 chr17 10561253 rs8069980 A G 225.04 PASS AC=1;AF=0.50;AN=2;DB;DP=5;Dels=0.00;HRun=0;HaplotypeScore=0.2720;MQ=121.57;MQ0=0;QD=17.31;SB=-81.82;sumGLbyD=24.03 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,508 0/1:18,16:31:99:420,0,508 0/0:47,0:47:99:767,0,618 chr17 10561870 rs201613 A T 573.41 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0235;MQ=71.31;MQ0=0;QD=27.31;SB=-150.86;sumGLbyD=32.37 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,509 0/1:18,16:31:99:420,0,509 0/0:47,0:47:99:767,0,619 chr17 10562314 rs201612 A G 493.04 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.1016;MQ=86.36;MQ0=0;QD=25.95;SB=-217.91;sumGLbyD=31.22 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,510 0/1:18,16:31:99:420,0,510 0/0:47,0:47:99:767,0,620 chr17 10564040 rs201610 A G 204.13 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.1945;MQ=81.76;MQ0=1;QD=22.68;SB=-73.72;sumGLbyD=31.57 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,511 0/1:18,16:31:99:420,0,511 0/0:47,0:47:99:767,0,621 chr17 10565671 rs201609 T A 357.22 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=108.65;MQ0=0;QD=22.33;SB=-195.35;sumGLbyD=28.43 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,512 0/1:18,16:31:99:420,0,512 0/0:47,0:47:99:767,0,622 chr17 10572875 rs4792015 G C 68.21 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=110.77;MQ0=0;QD=22.74;SB=-33.97;sumGLbyD=38.09 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,513 0/1:18,16:31:99:420,0,513 0/0:47,0:47:99:767,0,623 chr17 10573457 rs2662970 T G 401.36 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0718;MQ=102.03;MQ0=0;QD=33.45;SB=-101.11;sumGLbyD=39.98 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,514 0/1:18,16:31:99:420,0,514 0/0:47,0:47:99:767,0,624 chr17 10320168 rs2159083 A G 207.31 PASS AC=4;AF=1.00;AN=4;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=142.17;MQ0=0;QD=23.03;SB=-92.12;sumGLbyD=30.02 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,515 0/1:18,16:31:99:420,0,515 0/0:47,0:47:99:767,0,625 chr17 10323020 rs8065604 C A 8738.66 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=2;HaplotypeScore=0.0392;MQ=62.85;MQ0=0;QD=33.23;SB=-752.86;sumGLbyD=32.97 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,516 0/1:18,16:31:99:420,0,516 0/0:47,0:47:99:767,0,626 chr17 10328960 rs11078846 A T 339.12 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=6;HaplotypeScore=0.0000;MQ=91.03;MQ0=0;QD=28.26;SB=-104.68;sumGLbyD=33.63 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,517 0/1:18,16:31:99:420,0,517 0/0:47,0:47:99:767,0,627 chr17 10334014 rs55943565 A G 70.29 PASS AC=1;AF=0.50;AN=2;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=136.20;MQ0=0;QD=14.06;SB=-67.02;sumGLbyD=23.71 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,518 0/1:18,16:31:99:420,0,518 0/0:47,0:47:99:767,0,628 chr17 10335133 rs12938960 G A 263.94 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=105.90;MQ0=0;QD=32.99;SB=-41.22;sumGLbyD=39.63 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,519 0/1:18,16:31:99:420,0,519 0/0:47,0:47:99:767,0,629 chr17 10335963 rs57457720 T C 224.55 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=2;HaplotypeScore=0.0000;MQ=110.92;MQ0=0;QD=32.08;SB=-112.84;sumGLbyD=38.91 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,520 0/1:18,16:31:99:420,0,520 0/0:47,0:47:99:767,0,630 chr17 10340102 rs2190754 T C 531.79 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0391;MQ=86.07;MQ0=0;QD=35.45;SB=-192.17;sumGLbyD=39.45 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,521 0/1:18,16:31:99:420,0,521 0/0:47,0:47:99:767,0,631 chr17 10344306 rs2215087 T C 213.32 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=97.31;MQ0=0;QD=26.66;SB=-63.60;sumGLbyD=33.74 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,522 0/1:18,16:31:99:420,0,522 0/0:47,0:47:99:767,0,632 chr17 10345331 rs11654423 C T 229.62 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=3;HaplotypeScore=0.1250;MQ=130.91;MQ0=0;QD=28.70;SB=-108.56;sumGLbyD=36.18 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,523 0/1:18,16:31:99:420,0,523 0/0:47,0:47:99:767,0,633 chr17 10346781 rs3744554 T C 153370.2 PASS AC=6;AF=1.00;AN=6;DB;DP=139;DS;Dels=0.00;HRun=0;HaplotypeScore=2.4506;MQ=70.68;MQ0=0;QD=29.11;SB=-74343.18;sumGLbyD=28.57 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,524 0/1:18,16:31:99:420,0,524 0/0:47,0:47:99:767,0,634 chr17 10348354 rs2277649 T C 154441.47 PASS AC=6;AF=1.00;AN=6;DB;DP=137;DS;Dels=0.00;HRun=2;HaplotypeScore=2.8038;MQ=64.56;MQ0=28;QD=29.15;SB=-67011.34;sumGLbyD=28.46 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,525 0/1:18,16:31:99:420,0,525 0/0:47,0:47:99:767,0,635 chr17 10352579 rs2108605 C G 23551.3 PASS AC=6;AF=1.00;AN=6;DB;DP=7;Dels=0.02;HRun=0;HaplotypeScore=0.1104;MQ=63.68;MQ0=0;QD=35.96;SB=-5240.96;sumGLbyD=36.01 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,526 0/1:18,16:31:99:420,0,526 0/0:47,0:47:99:767,0,636 chr17 10354974 rs2058101 T C 27460.51 PASS AC=5;AF=0.83;AN=6;DB;DP=15;Dels=0.00;HRun=0;HaplotypeScore=0.2415;MQ=66.45;MQ0=0;QD=29.88;SB=-8315.75;sumGLbyD=29.03 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,527 0/1:18,16:31:99:420,0,527 0/0:47,0:47:99:767,0,637 chr17 10355371 rs11651295 C T 104095.01 PASS AC=6;AF=1.00;AN=6;DB;DP=115;DS;Dels=0.00;HRun=1;HaplotypeScore=4.6944;MQ=69.06;MQ0=0;QD=24.28;SB=-47762.71;sumGLbyD=23.78 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,528 0/1:18,16:31:99:420,0,528 0/0:47,0:47:99:767,0,638 chr17 10355763 rs917361 T C 146366.66 PASS AC=6;AF=1.00;AN=6;DB;DP=86;DS;Dels=0.00;HRun=0;HaplotypeScore=1.0706;MQ=67.16;MQ0=0;QD=31.61;SB=-73848.63;sumGLbyD=31.03 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,529 0/1:18,16:31:99:420,0,529 0/0:47,0:47:99:767,0,639 chr17 10356816 rs3744557 C G 109807.45 PASS AC=6;AF=1.00;AN=6;DB;DP=120;DS;Dels=0.00;HRun=0;HaplotypeScore=0.8416;MQ=75.13;MQ0=0;QD=33.91;SB=-50435.36;sumGLbyD=33.33 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,530 0/1:18,16:31:99:420,0,530 0/0:47,0:47:99:767,0,640 chr17 10360016 rs2041123 C G 65513.24 PASS AC=4;AF=1.00;AN=4;DB;DP=5;DS;Dels=0.00;HRun=0;HaplotypeScore=0.2913;MQ=60.72;MQ0=0;QD=33.05;SB=-5093.42;sumGLbyD=32.27 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,531 0/1:18,16:31:99:420,0,531 0/0:47,0:47:99:767,0,641 chr17 11601869 rs12601998 T G 357.29 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=3;HaplotypeScore=0.0000;MQ=105.90;MQ0=0;QD=25.52;SB=-60.61;sumGLbyD=31.27 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,532 0/1:18,16:31:99:420,0,532 0/0:47,0:47:99:767,0,642 chr17 11602338 rs2079723 G T 385.47 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.1938;MQ=81.34;MQ0=0;QD=29.65;SB=-93.59;sumGLbyD=34.01 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,533 0/1:18,16:31:99:420,0,533 0/0:47,0:47:99:767,0,643 chr17 11603300 rs887233 G T 57551.76 PASS AC=6;AF=1.00;AN=6;DB;DP=21;DS;Dels=0.00;HRun=1;HaplotypeScore=1.0662;MQ=63.80;MQ0=0;QD=31.74;SB=-5149.40;sumGLbyD=31.14 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,534 0/1:18,16:31:99:420,0,534 0/0:47,0:47:99:767,0,644 chr17 11604598 rs7214186 T A 94206.69 PASS AC=6;AF=1.00;AN=6;DB;DP=114;DS;Dels=0.00;HRun=0;HaplotypeScore=3.3074;MQ=73.80;MQ0=0;QD=27.02;SB=-13371.84;sumGLbyD=26.54 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,535 0/1:18,16:31:99:420,0,535 0/0:47,0:47:99:767,0,645 chr17 11605565 rs7219677 T A 477.98 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=86.07;MQ0=0;QD=29.87;SB=-230.95;sumGLbyD=33.98 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,536 0/1:18,16:31:99:420,0,536 0/0:47,0:47:99:767,0,646 chr17 11606483 rs11655608 C T 387.16 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0413;MQ=99.91;MQ0=0;QD=27.65;SB=-88.15;sumGLbyD=33.80 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,537 0/1:18,16:31:99:420,0,537 0/0:47,0:47:99:767,0,647 chr17 11610875 . A G 101.23 PASS AC=2;AF=0.50;AN=4;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0815;MQ=94.27;MQ0=0;QD=20.25;SB=-55.56;sumGLbyD=37.05 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,538 0/1:18,16:31:99:420,0,538 0/0:47,0:47:99:767,0,648 chr17 11613470 rs2052047 T C 234.72 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=99.07;MQ0=0;QD=33.53;SB=-114.76;sumGLbyD=40.37 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,539 0/1:18,16:31:99:420,0,539 0/0:47,0:47:99:767,0,649 chr17 11613656 rs2052046 A G 241.81 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=100.60;MQ0=0;QD=30.23;SB=-152.74;sumGLbyD=36.57 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,540 0/1:18,16:31:99:420,0,540 0/0:47,0:47:99:767,0,650 chr17 11613987 rs4393609 A T 139.99 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=110.92;MQ0=0;QD=23.33;SB=-76.15;sumGLbyD=32.26 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,541 0/1:18,16:31:99:420,0,541 0/0:47,0:47:99:767,0,651 chr17 11616900 rs9906094 A G 312.88 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=130.91;MQ0=0;QD=34.76;SB=-153.05;sumGLbyD=40.29 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,542 0/1:18,16:31:99:420,0,542 0/0:47,0:47:99:767,0,652 chr17 11617016 rs9912412 G A 326.26 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=117.27;MQ0=0;QD=29.66;SB=-143.70;sumGLbyD=34.41 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,543 0/1:18,16:31:99:420,0,543 0/0:47,0:47:99:767,0,653 chr17 11622460 rs12945440 C T 45637.81 PASS AC=4;AF=1.00;AN=4;DB;DP=7;Dels=0.00;HRun=0;HaplotypeScore=0.6673;MQ=52.72;MQ0=0;QD=29.79;SB=-4049.67;sumGLbyD=29.31 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,544 0/1:18,16:31:99:420,0,544 0/0:47,0:47:99:767,0,654 chr17 11622494 rs12945437 A G 56415.74 PASS AC=2;AF=1.00;AN=2;DB;DP=3;DS;Dels=0.00;HRun=0;HaplotypeScore=1.7984;MQ=51.05;MQ0=0;QD=29.01;SB=-5699.11;sumGLbyD=28.38 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,545 0/1:18,16:31:99:420,0,545 0/0:47,0:47:99:767,0,655 chr17 11622953 rs8076210 G A 48843.71 PASS AC=6;AF=1.00;AN=6;DB;DP=7;Dels=0.00;HRun=0;HaplotypeScore=0.4425;MQ=58.98;MQ0=0;QD=32.94;SB=-6591.29;sumGLbyD=32.40 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,546 0/1:18,16:31:99:420,0,546 0/0:47,0:47:99:767,0,656 chr17 11624710 rs12948671 C T 255.1 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0313;MQ=85.06;MQ0=0;QD=28.34;SB=-89.38;sumGLbyD=38.50 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,547 0/1:18,16:31:99:420,0,547 0/0:47,0:47:99:767,0,657 chr17 11625791 rs9907611 G A 223.85 PASS AC=3;AF=0.75;AN=4;DB;DP=3;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=109.72;MQ0=0;QD=18.65;SB=-131.37;sumGLbyD=25.67 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,548 0/1:18,16:31:99:420,0,548 0/0:47,0:47:99:767,0,658 chr17 11629570 rs9896753 C T 460.6 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=84.75;MQ0=0;QD=28.79;SB=-169.77;sumGLbyD=33.44 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,549 0/1:18,16:31:99:420,0,549 0/0:47,0:47:99:767,0,659 chr17 11629624 rs9898563 T C 592.59 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=96.96;MQ0=0;QD=28.22;SB=-269.14;sumGLbyD=31.66 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,550 0/1:18,16:31:99:420,0,550 0/0:47,0:47:99:767,0,660 chr17 11630103 rs9905040 T C 209.16 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=110.92;MQ0=0;QD=29.88;SB=-75.67;sumGLbyD=37.14 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,551 0/1:18,16:31:99:420,0,551 0/0:47,0:47:99:767,0,661 chr17 11630869 rs6502167 C A 32304.61 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.1985;MQ=59.69;MQ0=0;QD=37.78;SB=-3165.83;sumGLbyD=37.81 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,552 0/1:18,16:31:99:420,0,552 0/0:47,0:47:99:767,0,662 chr17 11631525 rs8072435 A G 16191.71 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0905;MQ=56.75;MQ0=0;QD=35.20;SB=-1494.45;sumGLbyD=35.27 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,553 0/1:18,16:31:99:420,0,553 0/0:47,0:47:99:767,0,663 chr17 11631908 rs2874668 A T 257.07 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.1094;MQ=81.31;MQ0=0;QD=25.71;SB=-98.51;sumGLbyD=32.99 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,554 0/1:18,16:31:99:420,0,554 0/0:47,0:47:99:767,0,664 chr17 11632077 rs1318535 A G 580.89 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0261;MQ=76.88;MQ0=0;QD=32.27;SB=-233.62;sumGLbyD=36.40 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,555 0/1:18,16:31:99:420,0,555 0/0:47,0:47:99:767,0,665 chr17 11635665 rs8075552 G A 355.4 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0335;MQ=100.31;MQ0=0;QD=25.39;SB=-121.24;sumGLbyD=31.43 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,556 0/1:18,16:31:99:420,0,556 0/0:47,0:47:99:767,0,666 chr17 11636407 rs9897529 T C 644.04 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=98.60;MQ0=0;QD=33.90;SB=-345.08;sumGLbyD=37.38 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,557 0/1:18,16:31:99:420,0,557 0/0:47,0:47:99:767,0,667 chr17 11636991 rs4792163 A G 318.02 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=94.53;MQ0=0;QD=31.80;SB=-128.77;sumGLbyD=37.00 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,558 0/1:18,16:31:99:420,0,558 0/0:47,0:47:99:767,0,668 chr17 11645786 rs8082578 T A 66080.72 PASS AC=6;AF=1.00;AN=6;DB;DP=24;Dels=0.00;HRun=1;HaplotypeScore=0.1944;MQ=65.31;MQ0=0;QD=37.80;SB=-6161.76;sumGLbyD=37.80 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,559 0/1:18,16:31:99:420,0,559 0/0:47,0:47:99:767,0,669 chr17 11647517 rs4792164 C G 1401.09 PASS AC=6;AF=1.00;AN=6;DB;DP=4;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=98.40;MQ0=0;QD=35.93;SB=-425.02;sumGLbyD=38.52 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,560 0/1:18,16:31:99:420,0,560 0/0:47,0:47:99:767,0,670 chr17 11648332 rs3744578 C T 106762.89 PASS AC=4;AF=0.67;AN=6;DB;DP=129;DS;Dels=0.00;HRun=2;HaplotypeScore=1.4377;MQ=76.70;MQ0=0;QD=31.94;SB=-39620.78;sumGLbyD=31.47 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,561 0/1:18,16:31:99:420,0,561 0/0:47,0:47:99:767,0,671 chr17 11648444 rs3744580 T C 45059.76 PASS AC=4;AF=0.67;AN=6;DB;DP=123;DS;Dels=0.00;HRun=0;HaplotypeScore=0.5538;MQ=84.57;MQ0=0;QD=25.88;SB=-5248.60;sumGLbyD=24.21 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,562 0/1:18,16:31:99:420,0,562 0/0:47,0:47:99:767,0,672 chr17 11651057 rs3744581 A G 31668.57 PASS AC=4;AF=0.67;AN=6;DB;DP=72;DS;Dels=0.00;HRun=0;HaplotypeScore=7.3149;MQ=62.43;MQ0=0;QD=12.71;SB=-11048.35;sumGLbyD=10.80 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,563 0/1:18,16:31:99:420,0,563 0/0:47,0:47:99:767,0,673 chr17 11651139 rs3744582 C T 7990.52 PASS AC=2;AF=0.33;AN=6;DB;DP=43;DS;Dels=0.00;HRun=0;HaplotypeScore=2.0225;MQ=63.04;MQ0=0;QD=18.41;SB=-766.51;sumGLbyD=15.51 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,564 0/1:18,16:31:99:420,0,564 0/0:47,0:47:99:767,0,674 chr17 11653806 rs1986938 A G 74.39 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=154.61;MQ0=0;QD=24.80;SB=-36.06;sumGLbyD=38.14 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,565 0/1:18,16:31:99:420,0,565 0/0:47,0:47:99:767,0,675 chr17 11655126 rs12103853 G T 298.11 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=2;HaplotypeScore=0.0000;MQ=101.83;MQ0=0;QD=33.12;SB=-143.16;sumGLbyD=38.96 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,566 0/1:18,16:31:99:420,0,566 0/0:47,0:47:99:767,0,676 chr17 11656465 rs3744583 A G 19652.28 PASS AC=4;AF=0.67;AN=6;DB;DP=12;Dels=0.00;HRun=0;HaplotypeScore=0.2109;MQ=63.45;MQ0=0;QD=23.82;SB=-1887.16;sumGLbyD=21.80 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,567 0/1:18,16:31:99:420,0,567 0/0:47,0:47:99:767,0,677 chr17 11657074 rs12940977 C T 170.12 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=100.31;MQ0=0;QD=24.30;SB=-107.07;sumGLbyD=33.27 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,568 0/1:18,16:31:99:420,0,568 0/0:47,0:47:99:767,0,678 chr17 11657214 rs12941478 C T 188.56 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0427;MQ=88.27;MQ0=0;QD=23.57;SB=-95.92;sumGLbyD=32.94 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,569 0/1:18,16:31:99:420,0,569 0/0:47,0:47:99:767,0,679 chr17 11657671 rs2191076 T A 131.6 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=115.68;MQ0=0;QD=26.32;SB=-61.53;sumGLbyD=37.04 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,570 0/1:18,16:31:99:420,0,570 0/0:47,0:47:99:767,0,680 chr17 11658311 rs11651819 A C 113.37 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.1987;MQ=112.02;MQ0=0;QD=28.34;SB=-33.97;sumGLbyD=40.86 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,571 0/1:18,16:31:99:420,0,571 0/0:47,0:47:99:767,0,681 chr17 9628211 . G A 233.68 PASS AC=2;AF=0.50;AN=4;DP=4;Dels=0.00;HRun=2;HaplotypeScore=0.0000;MQ=106.92;MQ0=0;QD=19.47;SB=-131.03;sumGLbyD=28.89 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,572 0/1:18,16:31:99:420,0,572 0/0:47,0:47:99:767,0,682 chr17 9628328 rs882425 C T 178.62 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=2;HaplotypeScore=0.0466;MQ=75.85;MQ0=0;QD=22.33;SB=-50.34;sumGLbyD=35.13 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,573 0/1:18,16:31:99:420,0,573 0/0:47,0:47:99:767,0,683 chr17 9629560 . T C 265.03 PASS AC=4;AF=1.00;AN=4;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.1250;MQ=84.52;MQ0=0;QD=26.50;SB=-121.79;sumGLbyD=37.93 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,574 0/1:18,16:31:99:420,0,574 0/0:47,0:47:99:767,0,684 chr17 9629626 . G A 221.57 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.1236;MQ=73.81;MQ0=0;QD=24.62;SB=6.87;sumGLbyD=35.48 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,575 0/1:18,16:31:99:420,0,575 0/0:47,0:47:99:767,0,685 chr17 9630887 rs9889256 C A 370.89 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=79.02;MQ0=0;QD=26.49;SB=-215.35;sumGLbyD=33.47 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,576 0/1:18,16:31:99:420,0,576 0/0:47,0:47:99:767,0,686 chr17 9630915 rs9896300 T C 312.11 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=79.81;MQ0=0;QD=31.21;SB=-37.52;sumGLbyD=41.09 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,577 0/1:18,16:31:99:420,0,577 0/0:47,0:47:99:767,0,687 chr17 9631107 rs9893729 G A 383.25 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=86.93;MQ0=0;QD=29.48;SB=-170.02;sumGLbyD=33.61 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,578 0/1:18,16:31:99:420,0,578 0/0:47,0:47:99:767,0,688 chr17 9635594 rs9900191 C T 282.48 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.1175;MQ=79.74;MQ0=0;QD=23.54;SB=-111.49;sumGLbyD=31.66 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,579 0/1:18,16:31:99:420,0,579 0/0:47,0:47:99:767,0,689 chr17 9640554 . G T 57.33 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=117.27;MQ0=0;QD=19.11;SB=-19.67;sumGLbyD=35.80 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,580 0/1:18,16:31:99:420,0,580 0/0:47,0:47:99:767,0,690 chr17 9641378 rs17809777 G T 262.67 PASS AC=5;AF=0.83;AN=6;DB;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=104.25;MQ0=0;QD=21.89;SB=-50.01;sumGLbyD=28.52 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,581 0/1:18,16:31:99:420,0,581 0/0:47,0:47:99:767,0,691 chr17 9641394 . T C 219.1 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.1885;MQ=76.59;MQ0=0;QD=19.92;SB=-94.11;sumGLbyD=26.26 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,582 0/1:18,16:31:99:420,0,582 0/0:47,0:47:99:767,0,692 chr17 9641728 rs56739957 A T 140.59 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=87.08;MQ0=0;QD=23.43;SB=-82.17;sumGLbyD=34.27 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,583 0/1:18,16:31:99:420,0,583 0/0:47,0:47:99:767,0,693 chr17 9642184 rs11078812 G A 100.81 PASS AC=1;AF=0.50;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=105.90;MQ0=0;QD=25.20;SB=-60.33;sumGLbyD=40.57 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,584 0/1:18,16:31:99:420,0,584 0/0:47,0:47:99:767,0,694 chr17 9642185 rs11078813 A G 106.97 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=105.90;MQ0=0;QD=26.74;SB=-66.86;sumGLbyD=41.37 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,585 0/1:18,16:31:99:420,0,585 0/0:47,0:47:99:767,0,695 chr17 9642348 rs12453694 A G 280.6 PASS AC=4;AF=1.00;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=112.96;MQ0=0;QD=28.06;SB=-137.38;sumGLbyD=35.76 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,586 0/1:18,16:31:99:420,0,586 0/0:47,0:47:99:767,0,696 chr17 9644237 rs8082371 T C 159.75 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=4;HaplotypeScore=0.0000;MQ=83.57;MQ0=0;QD=22.82;SB=6.50;sumGLbyD=35.78 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,587 0/1:18,16:31:99:420,0,587 0/0:47,0:47:99:767,0,697 chr17 9644575 . G A 79.96 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0565;MQ=86.70;MQ0=0;QD=19.99;SB=-24.34;sumGLbyD=37.87 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,588 0/1:18,16:31:99:420,0,588 0/0:47,0:47:99:767,0,698 chr17 9649037 rs11651328 A T 145.51 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0665;MQ=91.90;MQ0=0;QD=20.79;SB=-26.57;sumGLbyD=30.84 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,589 0/1:18,16:31:99:420,0,589 0/0:47,0:47:99:767,0,699 chr17 9649218 rs4990660 C G 189.94 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0361;MQ=92.23;MQ0=0;QD=17.27;SB=-42.29;sumGLbyD=24.93 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,590 0/1:18,16:31:99:420,0,590 0/0:47,0:47:99:767,0,700 chr17 9652499 rs531437 G A 353.17 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=88.32;MQ0=0;QD=32.11;SB=-107.03;sumGLbyD=37.54 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,591 0/1:18,16:31:99:420,0,591 0/0:47,0:47:99:767,0,701 chr17 9653307 . T C 113.65 PASS AC=3;AF=0.75;AN=4;DP=2;Dels=0.00;HRun=6;HaplotypeScore=0.2613;MQ=101.07;MQ0=0;QD=22.73;SB=-61.68;sumGLbyD=38.80 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,592 0/1:18,16:31:99:420,0,592 0/0:47,0:47:99:767,0,702 chr17 9653443 . G A 158.64 PASS AC=1;AF=0.50;AN=2;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=81.90;MQ0=0;QD=19.83;SB=-88.85;sumGLbyD=29.13 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,593 0/1:18,16:31:99:420,0,593 0/0:47,0:47:99:767,0,703 chr17 9653852 rs380596 G A 266.39 PASS AC=3;AF=0.75;AN=4;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.2019;MQ=96.96;MQ0=0;QD=26.64;SB=-93.10;sumGLbyD=35.64 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,594 0/1:18,16:31:99:420,0,594 0/0:47,0:47:99:767,0,704 chr17 9658186 rs8068501 A G 178.76 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0521;MQ=97.03;MQ0=0;QD=29.79;SB=-36.81;sumGLbyD=41.05 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,595 0/1:18,16:31:99:420,0,595 0/0:47,0:47:99:767,0,705 chr17 9658222 rs8066782 G T 110.54 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0427;MQ=89.85;MQ0=0;QD=18.42;SB=11.87;sumGLbyD=30.23 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,596 0/1:18,16:31:99:420,0,596 0/0:47,0:47:99:767,0,706 chr17 9658896 rs7216419 A G 199.32 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.2055;MQ=83.20;MQ0=0;QD=22.15;SB=-26.87;sumGLbyD=30.98 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,597 0/1:18,16:31:99:420,0,597 0/0:47,0:47:99:767,0,707 chr17 9659961 rs409729 T C 227.27 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.1111;MQ=93.15;MQ0=0;QD=25.25;SB=-125.51;sumGLbyD=32.72 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,598 0/1:18,16:31:99:420,0,598 0/0:47,0:47:99:767,0,708 chr17 9662605 rs2956061 T C 96.9 PASS AC=1;AF=0.50;AN=2;DB;DP=1;Dels=0.00;HRun=2;HaplotypeScore=0.2216;MQ=116.48;MQ0=0;QD=19.38;SB=-60.71;sumGLbyD=32.37 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,599 0/1:18,16:31:99:420,0,599 0/0:47,0:47:99:767,0,709 chr17 9667597 rs404027 A G 311.16 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0607;MQ=74.50;MQ0=0;QD=22.23;SB=-159.35;sumGLbyD=30.57 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,600 0/1:18,16:31:99:420,0,600 0/0:47,0:47:99:767,0,710 chr17 9670820 rs2937970 C G 274.37 PASS AC=3;AF=0.50;AN=6;DB;DP=4;Dels=0.00;HRun=3;HaplotypeScore=0.1727;MQ=111.83;MQ0=0;QD=24.94;SB=-104.11;sumGLbyD=34.18 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,601 0/1:18,16:31:99:420,0,601 0/0:47,0:47:99:767,0,711 chr17 9672809 rs4791863 T C 385.06 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.1046;MQ=68.63;MQ0=0;QD=25.67;SB=-48.65;sumGLbyD=34.42 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,602 0/1:18,16:31:99:420,0,602 0/0:47,0:47:99:767,0,712 chr17 9675621 rs2280491 C G 194.73 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=95.04;MQ0=0;QD=24.34;SB=-122.18;sumGLbyD=36.75 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,603 0/1:18,16:31:99:420,0,603 0/0:47,0:47:99:767,0,713 chr17 9683087 rs11078817 G C 320.07 PASS AC=1;AF=0.50;AN=2;DB;DP=1;Dels=0.00;HRun=2;HaplotypeScore=0.0676;MQ=70.60;MQ0=0;QD=24.62;SB=-98.03;sumGLbyD=31.17 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,604 0/1:18,16:31:99:420,0,604 0/0:47,0:47:99:767,0,714 chr17 9693536 rs10852916 G A 322.64 PASS AC=1;AF=0.50;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=81.78;MQ0=0;QD=24.82;SB=-66.62;sumGLbyD=31.11 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,605 0/1:18,16:31:99:420,0,605 0/0:47,0:47:99:767,0,715 chr17 9696199 rs8073531 G C 150.87 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=2;HaplotypeScore=0.0427;MQ=118.63;MQ0=0;QD=25.14;SB=-25.88;sumGLbyD=37.63 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,606 0/1:18,16:31:99:420,0,606 0/0:47,0:47:99:767,0,716 chr17 9696200 rs8074657 C T 149.89 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0427;MQ=118.63;MQ0=0;QD=24.98;SB=-25.86;sumGLbyD=37.47 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,607 0/1:18,16:31:99:420,0,607 0/0:47,0:47:99:767,0,717 chr17 9697803 . G T 225.32 PASS AC=2;AF=1.00;AN=2;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0585;MQ=80.63;MQ0=0;QD=28.17;SB=-88.69;sumGLbyD=40.55 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,608 0/1:18,16:31:99:420,0,608 0/0:47,0:47:99:767,0,718 chr17 9697822 rs3915463 A C 595.48 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.1667;MQ=77.70;MQ0=0;QD=29.77;SB=-294.36;sumGLbyD=34.23 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,609 0/1:18,16:31:99:420,0,609 0/0:47,0:47:99:767,0,719 chr17 9698307 rs4791869 C T 468.92 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.1083;MQ=99.33;MQ0=0;QD=26.05;SB=-165.26;sumGLbyD=30.18 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,610 0/1:18,16:31:99:420,0,610 0/0:47,0:47:99:767,0,720 chr17 9698396 rs4791870 C T 347.83 PASS AC=2;AF=1.00;AN=2;DB;DP=3;Dels=0.00;HRun=3;HaplotypeScore=0.2494;MQ=119.94;MQ0=0;QD=26.76;SB=-181.02;sumGLbyD=32.57 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,611 0/1:18,16:31:99:420,0,611 0/0:47,0:47:99:767,0,721 chr17 9698688 . A G 68.41 PASS AC=1;AF=0.25;AN=4;DP=3;Dels=0.00;HRun=0;HaplotypeScore=0.2179;MQ=82.48;MQ0=0;QD=11.40;SB=-22.66;sumGLbyD=21.93 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,612 0/1:18,16:31:99:420,0,612 0/0:47,0:47:99:767,0,722 chr17 9699974 rs9913800 T C 207.88 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=123.42;MQ0=0;QD=23.10;SB=-94.58;sumGLbyD=29.94 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,613 0/1:18,16:31:99:420,0,613 0/0:47,0:47:99:767,0,723 chr17 9700198 rs2315587 G A 414.26 PASS AC=2;AF=1.00;AN=2;DB;DP=2;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=81.74;MQ0=0;QD=31.87;SB=-164.97;sumGLbyD=35.56 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,614 0/1:18,16:31:99:420,0,614 0/0:47,0:47:99:767,0,724 chr17 9701390 rs2277691 T C 442.44 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0968;MQ=80.96;MQ0=0;QD=26.03;SB=-172.57;sumGLbyD=30.43 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,615 0/1:18,16:31:99:420,0,615 0/0:47,0:47:99:767,0,725 chr17 9702456 rs8064616 T C 357.4 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=2;HaplotypeScore=0.0000;MQ=83.59;MQ0=0;QD=27.49;SB=-176.79;sumGLbyD=32.09 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,616 0/1:18,16:31:99:420,0,616 0/0:47,0:47:99:767,0,726 chr17 9703299 rs17207745 G A 110.55 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=2;HaplotypeScore=0.0000;MQ=83.00;MQ0=0;QD=18.43;SB=-28.48;sumGLbyD=29.70 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,617 0/1:18,16:31:99:420,0,617 0/0:47,0:47:99:767,0,727 chr17 9703383 rs2315578 T C 523.48 PASS AC=4;AF=1.00;AN=4;DB;DP=3;Dels=0.00;HRun=2;HaplotypeScore=0.0000;MQ=109.12;MQ0=0;QD=30.79;SB=-262.59;sumGLbyD=35.58 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,618 0/1:18,16:31:99:420,0,618 0/0:47,0:47:99:767,0,728 chr17 9707044 rs9891232 T C 401.99 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=1;HaplotypeScore=0.0000;MQ=78.31;MQ0=0;QD=23.65;SB=-216.68;sumGLbyD=29.07 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,619 0/1:18,16:31:99:420,0,619 0/0:47,0:47:99:767,0,729 chr17 9709793 rs9914056 G A 411.79 PASS AC=2;AF=1.00;AN=2;DB;DP=1;Dels=0.00;HRun=0;HaplotypeScore=0.0000;MQ=86.07;MQ0=0;QD=25.74;SB=-227.09;sumGLbyD=30.16 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,620 0/1:18,16:31:99:420,0,620 0/0:47,0:47:99:767,0,730 chr17 9712767 rs9912329 A C 284.87 PASS AC=2;AF=0.50;AN=4;DB;DP=2;Dels=0.00;HRun=1;HaplotypeScore=0.0853;MQ=95.60;MQ0=0;QD=21.91;SB=-96.35;sumGLbyD=27.51 GT:AD:DP:GQ:PL 0/1:18,16:31:99:420,0,621 0/1:18,16:31:99:420,0,621 0/0:47,0:47:99:767,0,731