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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="mosaik" version="2.2.26">
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4 <install version="1.0">
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5 <actions>
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6 <action type="shell_command">git clone https://github.com/wanpinglee/MOSAIK.git mosaik</action>
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7 <action type="shell_command">git reset --hard e04c806bb1410cf1dbd1534991c46d696aec6723</action>
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8 <action type="shell_command">sed -i 's/ -static//g' src/includes/linux.inc</action>
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9 <action type="shell_command">make -C src/</action>
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10 <action type="move_directory_files">
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11 <source_directory>bin</source_directory>
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12 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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13 </action>
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14 <action type="move_directory_files">
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15 <source_directory>src/networkFile</source_directory>
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16 <destination_directory>$INSTALL_DIR/networkFile</destination_directory>
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17 </action>
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18 <action type="set_environment">
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19 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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20 </action>
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21 <action type="set_environment">
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22 <environment_variable name="MOSAIK_NETWORK_DIR" action="set_to">$INSTALL_DIR/networkFile</environment_variable>
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23 </action>
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24 </actions>
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25 </install>
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26 </package>
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27 <!-- <package name="samtools" version="0.1.19">
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28 <repository name="package_samtools_0_1_19" owner="devteam" />
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29 </package>-->
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30 </tool_dependency>
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