comparison tool_dependencies.xml @ 0:6adb6e16b00f draft

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author crs4
date Wed, 02 Apr 2014 12:32:52 -0400
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children 1fea05cdc1a1
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-1:000000000000 0:6adb6e16b00f
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="mosaik" version="2.2.26">
4 <install version="1.0">
5 <actions>
6 <action type="shell_command">git clone https://github.com/wanpinglee/MOSAIK.git mosaik</action>
7 <action type="shell_command">git reset --hard e04c806bb1410cf1dbd1534991c46d696aec6723</action>
8 <action type="shell_command">sed -i 's/ -static//g' src/includes/linux.inc</action>
9 <action type="shell_command">make -C src/</action>
10 <action type="move_directory_files">
11 <source_directory>bin</source_directory>
12 <destination_directory>$INSTALL_DIR/bin</destination_directory>
13 </action>
14 <action type="move_directory_files">
15 <source_directory>src/networkFile</source_directory>
16 <destination_directory>$INSTALL_DIR/networkFile</destination_directory>
17 </action>
18 <action type="set_environment">
19 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
20 </action>
21 <action type="set_environment">
22 <environment_variable name="MOSAIK_NETWORK_DIR" action="set_to">$INSTALL_DIR/networkFile</environment_variable>
23 </action>
24 </actions>
25 </install>
26 </package>
27 <!-- <package name="samtools" version="0.1.19">
28 <repository name="package_samtools_0_1_19" owner="devteam" />
29 </package>-->
30 </tool_dependency>