Mercurial > repos > crs4 > mosaik2
comparison tool_dependencies.xml @ 0:6adb6e16b00f draft
Uploaded
author | crs4 |
---|---|
date | Wed, 02 Apr 2014 12:32:52 -0400 |
parents | |
children | 1fea05cdc1a1 |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:6adb6e16b00f |
---|---|
1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="mosaik" version="2.2.26"> | |
4 <install version="1.0"> | |
5 <actions> | |
6 <action type="shell_command">git clone https://github.com/wanpinglee/MOSAIK.git mosaik</action> | |
7 <action type="shell_command">git reset --hard e04c806bb1410cf1dbd1534991c46d696aec6723</action> | |
8 <action type="shell_command">sed -i 's/ -static//g' src/includes/linux.inc</action> | |
9 <action type="shell_command">make -C src/</action> | |
10 <action type="move_directory_files"> | |
11 <source_directory>bin</source_directory> | |
12 <destination_directory>$INSTALL_DIR/bin</destination_directory> | |
13 </action> | |
14 <action type="move_directory_files"> | |
15 <source_directory>src/networkFile</source_directory> | |
16 <destination_directory>$INSTALL_DIR/networkFile</destination_directory> | |
17 </action> | |
18 <action type="set_environment"> | |
19 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
20 </action> | |
21 <action type="set_environment"> | |
22 <environment_variable name="MOSAIK_NETWORK_DIR" action="set_to">$INSTALL_DIR/networkFile</environment_variable> | |
23 </action> | |
24 </actions> | |
25 </install> | |
26 </package> | |
27 <!-- <package name="samtools" version="0.1.19"> | |
28 <repository name="package_samtools_0_1_19" owner="devteam" /> | |
29 </package>--> | |
30 </tool_dependency> |