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annotate tool_dependencies.xml @ 1:533b3b2a1e66 draft default tip

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Update Orione citation. Add <citations> tag. Use package_muscle_3_8_31 from iuc.
author crs4
date Thu, 04 Jun 2015 11:34:04 -0400
parents ec6f5279dc01
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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533b3b2a1e66 Update Orione citation. Add &lt;citations&gt; tag. Use package_muscle_3_8_31 from iuc.
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3 <set_environment version="1.0">
533b3b2a1e66 Update Orione citation. Add &lt;citations&gt; tag. Use package_muscle_3_8_31 from iuc.
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4 <!-- MUSCLE may require a lot of memory and computation time for a medium/large input multi-FASTA file, therefore a limit on the file size is enforced by the tool.
533b3b2a1e66 Update Orione citation. Add &lt;citations&gt; tag. Use package_muscle_3_8_31 from iuc.
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5 Change the FASTA_MAX_SIZE variable in the installed env.sh file to adjust this limit to your needs and available resources. -->
533b3b2a1e66 Update Orione citation. Add &lt;citations&gt; tag. Use package_muscle_3_8_31 from iuc.
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6 <environment_variable action="set_to" name="FASTA_MAX_SIZE">100000</environment_variable>
533b3b2a1e66 Update Orione citation. Add &lt;citations&gt; tag. Use package_muscle_3_8_31 from iuc.
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7 </set_environment>
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8 <package name="muscle" version="3.8.31">
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533b3b2a1e66 Update Orione citation. Add &lt;citations&gt; tag. Use package_muscle_3_8_31 from iuc.
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9 <repository changeset_revision="8f20b47725d8" name="package_muscle_3_8_31" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
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10 </package>
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11 </tool_dependency>