Mercurial > repos > crs4 > prokka

annotate test-data/out.err @ 18:d643e3b03500 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 442b1247ee31ec9872633be18784f346e4762486"
author iuc
date Sat, 13 Feb 2021 11:58:58 +0000
parents bf68eb663bc3
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
13
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
1 Discrepancy Report Results
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
2
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
3 Summary
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
4 DISC_PROTEIN_NAMES:All proteins have same name "hypothetical protein"
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
5 FATAL: MISSING_PROTEIN_ID:5 proteins have invalid IDs.
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
6 DISC_SOURCE_QUALS_ASNDISC:strain (all present, all same)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
7 DISC_SOURCE_QUALS_ASNDISC:taxname (all present, all same)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
8 DISC_FEATURE_COUNT:CDS: 5 present
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
9 DISC_COUNT_NUCLEOTIDES:7 nucleotide Bioseqs are present
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
10 FEATURE_LOCATION_CONFLICT:5 features have inconsistent gene locations.
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
11 NO_ANNOTATION:3 bioseqs have no features
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
12 DISC_QUALITY_SCORES:Quality scores are missing on all sequences.
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
13 ONCALLER_COMMENT_PRESENT:7 comment descriptors were found (all same)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
14 SHORT_PROT_SEQUENCES:2 protein sequences are shorter than 50 aa.
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
15 MISSING_GENOMEASSEMBLY_COMMENTS:7 bioseqs are missing GenomeAssembly structured comments
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
16 MOLTYPE_NOT_MRNA:7 molecule types are not set as mRNA.
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
17 TECHNIQUE_NOT_TSA:7 technique are not set as TSA
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
18 MISSING_STRUCTURED_COMMENT:7 sequences do not include structured comments.
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
19 MISSING_PROJECT:12 sequences do not include project.
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
20 DISC_INCONSISTENT_MOLINFO_TECH:Molinfo Technique Report (some missing, all same)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
21
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
22
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
23 Detailed Report
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
24
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
25 DiscRep_ALL:DISC_PROTEIN_NAMES::All proteins have same name "hypothetical protein"
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
26
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
27 FATAL: DiscRep_ALL:MISSING_PROTEIN_ID::5 proteins have invalid IDs.
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
28 outdir/prokka:contig2_1 (length 152)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
29 outdir/prokka:contig2_2 (length 38)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
30 outdir/prokka:contig4_1 (length 287)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
31 outdir/prokka:contig5_1 (length 43)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
32 outdir/prokka:contig6_1 (length 253)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
33
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
34 DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::strain (all present, all same)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
35 DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::7 sources have 'strain' for strain
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
36 DiscRep_ALL:DISC_SOURCE_QUALS_ASNDISC::taxname (all present, all same)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
37 DiscRep_SUB:DISC_SOURCE_QUALS_ASNDISC::7 sources have 'Genus species' for taxname
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
38 DiscRep_ALL:DISC_FEATURE_COUNT::CDS: 5 present
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
39 DiscRep_ALL:DISC_COUNT_NUCLEOTIDES::7 nucleotide Bioseqs are present
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
40 outdir/prokka:contig1 (length 350)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
41 outdir/prokka:contig2 (length 840)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
42 outdir/prokka:contig3 (length 210)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
43 outdir/prokka:contig4 (length 1260)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
44 outdir/prokka:contig5 (length 490)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
45 outdir/prokka:contig6 (length 1960)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
46 outdir/prokka:contig7 (length 276)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
47
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
48 DiscRep_ALL:FEATURE_LOCATION_CONFLICT::5 features have inconsistent gene locations.
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
49 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
14
eaee459f3d69 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 9019ffd38b2b6692fc24c9b41ab2c2539050b01f
iuc
parents: 13
diff changeset
50 outdir/prokka:CDS hypothetical protein contig2:40-498 HMJLFLJH_00001
13
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
51
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
52 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
14
eaee459f3d69 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 9019ffd38b2b6692fc24c9b41ab2c2539050b01f
iuc
parents: 13
diff changeset
53 outdir/prokka:CDS hypothetical protein contig2:498-614 HMJLFLJH_00002
13
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
54
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
55 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
14
eaee459f3d69 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 9019ffd38b2b6692fc24c9b41ab2c2539050b01f
iuc
parents: 13
diff changeset
56 outdir/prokka:CDS hypothetical protein contig4:21-884 HMJLFLJH_00003
13
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
57
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
58 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
14
eaee459f3d69 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 9019ffd38b2b6692fc24c9b41ab2c2539050b01f
iuc
parents: 13
diff changeset
59 outdir/prokka:CDS hypothetical protein contig5:275-406 HMJLFLJH_00004
13
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
60
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
61 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
14
eaee459f3d69 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 9019ffd38b2b6692fc24c9b41ab2c2539050b01f
iuc
parents: 13
diff changeset
62 outdir/prokka:CDS hypothetical protein contig6:6-767 HMJLFLJH_00005
13
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
63
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
64 DiscRep_ALL:NO_ANNOTATION::3 bioseqs have no features
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
65 outdir/prokka:contig1 (length 350)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
66 outdir/prokka:contig3 (length 210)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
67 outdir/prokka:contig7 (length 276)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
68
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
69 DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences.
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
70
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
71 DiscRep_ALL:ONCALLER_COMMENT_PRESENT::7 comment descriptors were found (all same)
16
bf68eb663bc3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 0d2c8359cf38498b417b395d081daad47d08ee40"
iuc
parents: 14
diff changeset
72 outdir/prokka:contig1:Annotated using prokka 1.14.5 from https://github.com/tseemann/prokka
bf68eb663bc3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 0d2c8359cf38498b417b395d081daad47d08ee40"
iuc
parents: 14
diff changeset
73 outdir/prokka:contig2:Annotated using prokka 1.14.5 from https://github.com/tseemann/prokka
bf68eb663bc3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 0d2c8359cf38498b417b395d081daad47d08ee40"
iuc
parents: 14
diff changeset
74 outdir/prokka:contig3:Annotated using prokka 1.14.5 from https://github.com/tseemann/prokka
bf68eb663bc3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 0d2c8359cf38498b417b395d081daad47d08ee40"
iuc
parents: 14
diff changeset
75 outdir/prokka:contig4:Annotated using prokka 1.14.5 from https://github.com/tseemann/prokka
bf68eb663bc3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 0d2c8359cf38498b417b395d081daad47d08ee40"
iuc
parents: 14
diff changeset
76 outdir/prokka:contig5:Annotated using prokka 1.14.5 from https://github.com/tseemann/prokka
bf68eb663bc3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 0d2c8359cf38498b417b395d081daad47d08ee40"
iuc
parents: 14
diff changeset
77 outdir/prokka:contig6:Annotated using prokka 1.14.5 from https://github.com/tseemann/prokka
bf68eb663bc3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 0d2c8359cf38498b417b395d081daad47d08ee40"
iuc
parents: 14
diff changeset
78 outdir/prokka:contig7:Annotated using prokka 1.14.5 from https://github.com/tseemann/prokka
13
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
79
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
80 DiscRep_ALL:SHORT_PROT_SEQUENCES::2 protein sequences are shorter than 50 aa.
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
81 outdir/prokka:contig2_2 (length 38)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
82 outdir/prokka:contig5_1 (length 43)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
83
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
84 DiscRep_ALL:MISSING_GENOMEASSEMBLY_COMMENTS::7 bioseqs are missing GenomeAssembly structured comments
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
85 outdir/prokka:contig1 (length 350)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
86 outdir/prokka:contig2 (length 840)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
87 outdir/prokka:contig3 (length 210)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
88 outdir/prokka:contig4 (length 1260)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
89 outdir/prokka:contig5 (length 490)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
90 outdir/prokka:contig6 (length 1960)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
91 outdir/prokka:contig7 (length 276)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
92
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
93 DiscRep_ALL:MOLTYPE_NOT_MRNA::7 molecule types are not set as mRNA.
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
94 outdir/prokka:contig1 (length 350)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
95 outdir/prokka:contig2 (length 840)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
96 outdir/prokka:contig3 (length 210)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
97 outdir/prokka:contig4 (length 1260)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
98 outdir/prokka:contig5 (length 490)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
99 outdir/prokka:contig6 (length 1960)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
100 outdir/prokka:contig7 (length 276)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
101
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
102 DiscRep_ALL:TECHNIQUE_NOT_TSA::7 technique are not set as TSA
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
103 outdir/prokka:contig1 (length 350)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
104 outdir/prokka:contig2 (length 840)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
105 outdir/prokka:contig3 (length 210)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
106 outdir/prokka:contig4 (length 1260)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
107 outdir/prokka:contig5 (length 490)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
108 outdir/prokka:contig6 (length 1960)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
109 outdir/prokka:contig7 (length 276)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
110
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
111 DiscRep_ALL:MISSING_STRUCTURED_COMMENT::7 sequences do not include structured comments.
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
112 outdir/prokka:contig1 (length 350)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
113 outdir/prokka:contig2 (length 840)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
114 outdir/prokka:contig3 (length 210)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
115 outdir/prokka:contig4 (length 1260)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
116 outdir/prokka:contig5 (length 490)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
117 outdir/prokka:contig6 (length 1960)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
118 outdir/prokka:contig7 (length 276)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
119
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
120 DiscRep_ALL:MISSING_PROJECT::12 sequences do not include project.
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
121 outdir/prokka:contig1 (length 350)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
122 outdir/prokka:contig2 (length 840)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
123 outdir/prokka:contig2_1 (length 152)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
124 outdir/prokka:contig2_2 (length 38)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
125 outdir/prokka:contig3 (length 210)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
126 outdir/prokka:contig4 (length 1260)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
127 outdir/prokka:contig4_1 (length 287)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
128 outdir/prokka:contig5 (length 490)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
129 outdir/prokka:contig5_1 (length 43)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
130 outdir/prokka:contig6 (length 1960)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
131 outdir/prokka:contig6_1 (length 253)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
132 outdir/prokka:contig7 (length 276)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
133
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
134 DiscRep_ALL:DISC_INCONSISTENT_MOLINFO_TECH::Molinfo Technique Report (some missing, all same)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
135 DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::technique (all missing)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
136 DiscRep_SUB:DISC_INCONSISTENT_MOLINFO_TECH::7 Molinfos are missing field technique
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
137 outdir/prokka:contig1 (length 350)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
138 outdir/prokka:contig2 (length 840)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
139 outdir/prokka:contig3 (length 210)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
140 outdir/prokka:contig4 (length 1260)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
141 outdir/prokka:contig5 (length 490)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
142 outdir/prokka:contig6 (length 1960)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
143 outdir/prokka:contig7 (length 276)
a17498c603ec planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
iuc
parents: 8
diff changeset
144