Mercurial > repos > crs4 > prokka

annotate COPYING @ 14:eaee459f3d69 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 9019ffd38b2b6692fc24c9b41ab2c2539050b01f
author iuc
date Wed, 28 Mar 2018 12:38:42 -0400
parents 392255fa7ab9
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
8
392255fa7ab9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 9a92d439f147a5cf2370e0686854911107de1144
iuc
parents: 7
diff changeset
1 Copyright © 2013 Lionel Guy
5
b9fea998270a Fix Prokka 1.8 dependency installation.
crs4
parents: 2
diff changeset
2 Copyright © 2013-2014 CRS4 Srl. http://www.crs4.it/
8
392255fa7ab9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 9a92d439f147a5cf2370e0686854911107de1144
iuc
parents: 7
diff changeset
3 Copyright © 2015-2016 Earlham Institute http://earlham.ac.uk/
0
95505a9fa26f Uploaded
crs4
parents:
diff changeset
4 Created by:
95505a9fa26f Uploaded
crs4
parents:
diff changeset
5 Paolo Uva <paolo.uva@crs4.it>
8
392255fa7ab9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 9a92d439f147a5cf2370e0686854911107de1144
iuc
parents: 7
diff changeset
6 Nicola Soranzo <nicola.soranzo@earlham.ac.uk>
2
4bafaa074484 Merge with Lionel Guy's wrapper. Directly call prokka, remove prokka.py . Add locustag, increment, gffver, compliant, addgenes, genus, species, strain, plasmid, gcode, usegenus, metagenome, fast, evalue, norrna, notrna params. Update BLAST+ dependency to 2.2.28. Add dependencies on prodigal and barrnap. Add readme.rst .
crs4
parents: 0
diff changeset
7 Lionel Guy <lionel.guy@icm.uu.se>
6
3ad7ef0ba385 Use <stdio> because prokka writes some warnings on stderr. Update Orione citation. Update Prokka citation. Support Prokka 1.10. Upgrade dependencies to package_minced_0_1_6, package_barrnap_0_5 and package_tbl2asn_23_7. Added --proteins option. Add <citations>.
crs4
parents: 5
diff changeset
8 Philip Mabon <philipmabon@gmail.com>
0
95505a9fa26f Uploaded
crs4
parents:
diff changeset
9
95505a9fa26f Uploaded
crs4
parents:
diff changeset
10 Permission is hereby granted, free of charge, to any person obtaining a
95505a9fa26f Uploaded
crs4
parents:
diff changeset
11 copy of this software and associated documentation files (the
95505a9fa26f Uploaded
crs4
parents:
diff changeset
12 "Software"), to deal in the Software without restriction, including
95505a9fa26f Uploaded
crs4
parents:
diff changeset
13 without limitation the rights to use, copy, modify, merge, publish,
95505a9fa26f Uploaded
crs4
parents:
diff changeset
14 distribute, sublicense, and/or sell copies of the Software, and to
95505a9fa26f Uploaded
crs4
parents:
diff changeset
15 permit persons to whom the Software is furnished to do so, subject to
95505a9fa26f Uploaded
crs4
parents:
diff changeset
16 the following conditions:
95505a9fa26f Uploaded
crs4
parents:
diff changeset
17
95505a9fa26f Uploaded
crs4
parents:
diff changeset
18 The above copyright notice and this permission notice shall be included
95505a9fa26f Uploaded
crs4
parents:
diff changeset
19 in all copies or substantial portions of the Software.
95505a9fa26f Uploaded
crs4
parents:
diff changeset
20
95505a9fa26f Uploaded
crs4
parents:
diff changeset
21 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
95505a9fa26f Uploaded
crs4
parents:
diff changeset
22 OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
95505a9fa26f Uploaded
crs4
parents:
diff changeset
23 MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
95505a9fa26f Uploaded
crs4
parents:
diff changeset
24 IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
95505a9fa26f Uploaded
crs4
parents:
diff changeset
25 CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
95505a9fa26f Uploaded
crs4
parents:
diff changeset
26 TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
95505a9fa26f Uploaded
crs4
parents:
diff changeset
27 SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.