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comparison test-data/out.gbk @ 8:392255fa7ab9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 9a92d439f147a5cf2370e0686854911107de1144
author iuc
date Fri, 28 Oct 2016 13:03:19 -0400
parents
children a17498c603ec
comparison
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7:f5e44aad6498 8:392255fa7ab9
1 LOCUS contig1 350 bp DNA linear 11-OCT-2016
2 DEFINITION Genus species strain strain.
3 ACCESSION
4 VERSION
5 KEYWORDS .
6 SOURCE Genus species
7 ORGANISM Genus species
8 Unclassified.
9 COMMENT Annotated using prokka 1.11 from http://www.vicbioinformatics.com.
10 FEATURES Location/Qualifiers
11 source 1..350
12 /organism="Genus species"
13 /mol_type="genomic DNA"
14 /strain="strain"
15 ORIGIN
16 1 gagttttatc gcttccatga cgcagaagtt aacactttcg gatatttctg atgagtcgaa
17 61 aaattatctt gataaagcag gaattactac tgcttgttta cgaattaaat cgaagtggac
18 121 tgctggcgga aaatgagaaa attcgaccta tccttgcgca gctcgagaag ctcttacttt
19 181 gcgacctttc gccatcaact aacgattctg tcaaaaactg acgcgttgga tgaggagaag
20 241 tggcttaata tgcttggcac gttcgtcaag gactggttta gatatgagtc acattttgtt
21 301 catggtagag attctcttgt tgacatttta aaagagcgtg gattactatc
22 //
23 LOCUS contig2 840 bp DNA linear 11-OCT-2016
24 DEFINITION Genus species strain strain.
25 ACCESSION
26 VERSION
27 KEYWORDS .
28 SOURCE Genus species
29 ORGANISM Genus species
30 Unclassified.
31 COMMENT Annotated using prokka 1.11 from http://www.vicbioinformatics.com.
32 FEATURES Location/Qualifiers
33 source 1..840
34 /organism="Genus species"
35 /mol_type="genomic DNA"
36 /strain="strain"
37 CDS 40..498
38 /locus_tag="PROKKA_00001"
39 /inference="ab initio prediction:Prodigal:2.60"
40 /codon_start=1
41 /transl_table=11
42 /product="hypothetical protein"
43 /translation="MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWI
44 ATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAE
45 FTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM"
46 CDS 498..614
47 /locus_tag="PROKKA_00002"
48 /inference="ab initio prediction:Prodigal:2.60"
49 /codon_start=1
50 /transl_table=11
51 /product="hypothetical protein"
52 /translation="MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF"
53 ORIGIN
54 1 tgagtccgat gctgttcaac cactaatagg taagaaatca tgagtcaagt tactgaacaa
55 61 tccgtacgtt tccagaccgc tttggcctct attaagctca ttcaggcttc tgccgttttg
56 121 gatttaaccg aagatgattt cgattttctg acgagtaaca aagtttggat tgctactgac
57 181 cgctctcgtg ctcgtcgctg cgttgaggct tgcgtttatg gtacgctgga ctttgtggga
58 241 taccctcgct ttcctgctcc tgttgagttt attgctgccg tcattgctta ttatgttcat
59 301 cccgtcaaca ttcaaacggc ctgtctcatc atggaaggcg ctgaatttac ggaaaacatt
60 361 attaatggcg tcgagcgtcc ggttaaagcc gctgaattgt tcgcgtttac cttgcgtgta
61 421 cgcgcaggaa acactgacgt tcttactgac gcagaagaaa acgtgcgtca aaaattacgt
62 481 gcggaaggag tgatgtaatg tctaaaggta aaaaacgttc tggcgctcgc cctggtcgtc
63 541 cgcagccgtt gcgaggtact aaaggcaagc gtaaaggcgc tcgtctttgg tatgtaggtg
64 601 gtcaacaatt ttaattgcag gggcttcggc cccttacttg aggataaatt atgtctaata
65 661 ttcaaactgg cgccgagcgt atgccgcatg acctttccca tcttggcttc cttgctggtc
66 721 agattggtcg tcttattacc atttcaacta ctccggttat cgctggcgac tccttcgaga
67 781 tggacgccgt tggcgctctc cgtctttctc cattgcgtcg tggccttgct attgactcta
68 //
69 LOCUS contig3 210 bp DNA linear 11-OCT-2016
70 DEFINITION Genus species strain strain.
71 ACCESSION
72 VERSION
73 KEYWORDS .
74 SOURCE Genus species
75 ORGANISM Genus species
76 Unclassified.
77 COMMENT Annotated using prokka 1.11 from http://www.vicbioinformatics.com.
78 FEATURES Location/Qualifiers
79 source 1..210
80 /organism="Genus species"
81 /mol_type="genomic DNA"
82 /strain="strain"
83 ORIGIN
84 1 ctgtagacat ttttactttt tatgtccctc atcgtcacgt ttatggtgaa cagtggatta
85 61 agttcatgaa ggatggtgtt aatgccactc ctctcccgac tgttaacact actggttata
86 121 ttgaccatgc cgcttttctt ggcacgatta accctgatac caataaaatc cctaagcatt
87 181 tgtttcaggg ttatttgaat atctataaca
88 //
89 LOCUS contig4 1260 bp DNA linear 11-OCT-2016
90 DEFINITION Genus species strain strain.
91 ACCESSION
92 VERSION
93 KEYWORDS .
94 SOURCE Genus species
95 ORGANISM Genus species
96 Unclassified.
97 COMMENT Annotated using prokka 1.11 from http://www.vicbioinformatics.com.
98 FEATURES Location/Qualifiers
99 source 1..1260
100 /organism="Genus species"
101 /mol_type="genomic DNA"
102 /strain="strain"
103 CDS 21..884
104 /locus_tag="PROKKA_00003"
105 /inference="ab initio prediction:Prodigal:2.60"
106 /codon_start=1
107 /transl_table=11
108 /product="hypothetical protein"
109 /translation="MPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQM
110 TTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRSN
111 LWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEHGTMFTLALVRFPPTATKEI
112 QYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQWYRYAPSY
113 VSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRN
114 LPTTRDSIMTS"
115 ORIGIN
116 1 actattttaa agcgccgtgg atgcctgacc gtaccgaggc taaccctaat gagcttaatc
117 61 aagatgatgc tcgttatggt ttccgttgct gccatctcaa aaacatttgg actgctccgc
118 121 ttcctcctga gactgagctt tctcgccaaa tgacgacttc taccacatct attgacatta
119 181 tgggtctgca agctgcttat gctaatttgc atactgacca agaacgtgat tacttcatgc
120 241 agcgttacca tgatgttatt tcttcatttg gaggtaaaac ctcttatgac gctgacaacc
121 301 gtcctttact tgtcatgcgc tctaatctct gggcatctgg ctatgatgtt gatggaactg
122 361 accaaacgtc gttaggccag ttttctggtc gtgttcaaca gacctataaa cattctgtgc
123 421 cgcgtttctt tgttcctgag catggcacta tgtttactct tgcgcttgtt cgttttccgc
124 481 ctactgcgac taaagagatt cagtacctta acgctaaagg tgctttgact tataccgata
125 541 ttgctggcga ccctgttttg tatggcaact tgccgccgcg tgaaatttct atgaaggatg
126 601 ttttccgttc tggtgattcg tctaagaagt ttaagattgc tgagggtcag tggtatcgtt
127 661 atgcgccttc gtatgtttct cctgcttatc accttcttga aggcttccca ttcattcagg
128 721 aaccgccttc tggtgatttg caagaacgcg tacttattcg ccaccatgat tatgaccagt
129 781 gtttccagtc cgttcagttg ttgcagtgga atagtcaggt taaatttaat gtgaccgttt
130 841 atcgcaatct gccgaccact cgcgattcaa tcatgacttc gtgataaaag attgagtgtg
131 901 aggttataac gccgaagcgg taaaaatttt aatttttgcc gctgaggggt tgaccaagcg
132 961 aagcgcggta ggttttctgc ttaggagttt aatcatgttt cagactttta tttctcgcca
133 1021 taattcaaac tttttttctg ataagctggt tctcacttct gttactccag cttcttcggc
134 1081 acctgtttta cagacaccta aagctacatc gtcaacgtta tattttgata gtttgacggt
135 1141 taatgctggt aatggtggtt ttcttcattg cattcagatg gatacatctg tcaacgccgc
136 1201 taatcaggtt gtttctgttg gtgctgatat tgcttttgat gccgacccta aattttttgc
137 //
138 LOCUS contig5 490 bp DNA linear 11-OCT-2016
139 DEFINITION Genus species strain strain.
140 ACCESSION
141 VERSION
142 KEYWORDS .
143 SOURCE Genus species
144 ORGANISM Genus species
145 Unclassified.
146 COMMENT Annotated using prokka 1.11 from http://www.vicbioinformatics.com.
147 FEATURES Location/Qualifiers
148 source 1..490
149 /organism="Genus species"
150 /mol_type="genomic DNA"
151 /strain="strain"
152 CDS 275..406
153 /locus_tag="PROKKA_00004"
154 /inference="ab initio prediction:Prodigal:2.60"
155 /codon_start=1
156 /transl_table=11
157 /product="hypothetical protein"
158 /translation="MVLLLAVLLLLLLVAPCLNCLEAVKKPPPVAFKVMCLLPITIL"
159 ORIGIN
160 1 ctgtttggtt cgctttgagt cttcttcggt tccgactacc ctcccgactg cctatgatgt
161 61 ttatcctttg aatggtcgcc atgatggtgg ttattatacc gtcaaggact gtgtgactat
162 121 tgacgtcctt ccccgtacgc cgggcaataa cgtttatgtt ggtttcatgg tttggtctaa
163 181 ctttaccgct actaaatgcc gcggattggt ttcgctgaat caggttatta aagagattat
164 241 ttgtctccag ccacttaagt gaggtgattt atgtttggtg ctattgctgg cggtattgct
165 301 tctgctcttg ctggtggcgc catgtctaaa ttgtttggag gcggtcaaaa agccgcctcc
166 361 ggtggcattc aaggtgatgt gcttgctacc gataacaata ctgtaggcat gggtgatgct
167 421 ggtattaaat ctgccattca aggctctaat gttcctaacc ctgatgaggc cgcccctagt
168 481 tttgtttctg
169 //
170 LOCUS contig6 1960 bp DNA linear 11-OCT-2016
171 DEFINITION Genus species strain strain.
172 ACCESSION
173 VERSION
174 KEYWORDS .
175 SOURCE Genus species
176 ORGANISM Genus species
177 Unclassified.
178 COMMENT Annotated using prokka 1.11 from http://www.vicbioinformatics.com.
179 FEATURES Location/Qualifiers
180 source 1..1960
181 /organism="Genus species"
182 /mol_type="genomic DNA"
183 /strain="strain"
184 CDS 6..767
185 /locus_tag="PROKKA_00005"
186 /inference="ab initio prediction:Prodigal:2.60"
187 /codon_start=1
188 /transl_table=11
189 /product="hypothetical protein"
190 /translation="MAKAGKGLLEGTLQAGTSAVSDKLLDLVGLGGKSAADKGKDTRD
191 YLAAAFPELNAWERAGADASSAGMVDAGFENQKELTKMQLDNQKEIAEMQNETQKEIA
192 GIQSATSRQNTKDQVYAQNEMLAYQQKESTARVASIMENTNLSKQQQVSEIMRQMLTQ
193 AQTAGQYFTNDQIKEMTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNVVTDAASG
194 VVDIFHGIDKAVADTWNNFWKDGKADGIGSNLSRK"
195 ORIGIN
196 1 gtgctatggc taaagctggt aaaggacttc ttgaaggtac gttgcaggct ggcacttctg
197 61 ccgtttctga taagttgctt gatttggttg gacttggtgg caagtctgcc gctgataaag
198 121 gaaaggatac tcgtgattat cttgctgctg catttcctga gcttaatgct tgggagcgtg
199 181 ctggtgctga tgcttcctct gctggtatgg ttgacgccgg atttgagaat caaaaagagc
200 241 ttactaaaat gcaactggac aatcagaaag agattgccga gatgcaaaat gagactcaaa
201 301 aagagattgc tggcattcag tcggcgactt cacgccagaa tacgaaagac caggtatatg
202 361 cacaaaatga gatgcttgct tatcaacaga aggagtctac tgctcgcgtt gcgtctatta
203 421 tggaaaacac caatctttcc aagcaacagc aggtttccga gattatgcgc caaatgctta
204 481 ctcaagctca aacggctggt cagtatttta ccaatgacca aatcaaagaa atgactcgca
205 541 aggttagtgc tgaggttgac ttagttcatc agcaaacgca gaatcagcgg tatggctctt
206 601 ctcatattgg cgctactgca aaggatattt ctaatgtcgt cactgatgct gcttctggtg
207 661 tggttgatat ttttcatggt attgataaag ctgttgccga tacttggaac aatttctgga
208 721 aagacggtaa agctgatggt attggctcta atttgtctag gaaataaccg tcaggattga
209 781 caccctccca attgtatgtt ttcatgcctc caaatcttgg aggctttttt atggttcgtt
210 841 cttattaccc ttctgaatgt cacgctgatt attttgactt tgagcgtatc gaggctctta
211 901 aacctgctat tgaggcttgt ggcatttcta ctctttctca atccccaatg cttggcttcc
212 961 ataagcagat ggataaccgc atcaagctct tggaagagat tctgtctttt cgtatgcagg
213 1021 gcgttgagtt cgataatggt gatatgtatg ttgacggcca taaggctgct tctgacgttc
214 1081 gtgatgagtt tgtatctgtt actgagaagt taatggatga attggcacaa tgctacaatg
215 1141 tgctccccca acttgatatt aataacacta tagaccaccg ccccgaaggg gacgaaaaat
216 1201 ggtttttaga gaacgagaag acggttacgc agttttgccg caagctggct gctgaacgcc
217 1261 ctcttaagga tattcgcgat gagtataatt accccaaaaa gaaaggtatt aaggatgagt
218 1321 gttcaagatt gctggaggcc tccactatga aatcgcgtag aggctttgct attcagcgtt
219 1381 tgatgaatgc aatgcgacag gctcatgctg atggttggtt tatcgttttt gacactctca
220 1441 cgttggctga cgaccgatta gaggcgtttt atgataatcc caatgctttg cgtgactatt
221 1501 ttcgtgatat tggtcgtatg gttcttgctg ccgagggtcg caaggctaat gattcacacg
222 1561 ccgactgcta tcagtatttt tgtgtgcctg agtatggtac agctaatggc cgtcttcatt
223 1621 tccatgcggt gcactttatg cggacacttc ctacaggtag cgttgaccct aattttggtc
224 1681 gtcgggtacg caatcgccgc cagttaaata gcttgcaaaa tacgtggcct tatggttaca
225 1741 gtatgcccat cgcagttcgc tacacgcagg acgctttttc acgttctggt tggttgtggc
226 1801 ctgttgatgc taaaggtgag ccgcttaaag ctaccagtta tatggctgtt ggtttctatg
227 1861 tggctaaata cgttaacaaa aagtcagata tggaccttgc tgctaaaggt ctaggagcta
228 1921 aagaatggaa caactcacta aaaaccaagc tgtcgctact
229 //
230 LOCUS contig7 276 bp DNA linear 11-OCT-2016
231 DEFINITION Genus species strain strain.
232 ACCESSION
233 VERSION
234 KEYWORDS .
235 SOURCE Genus species
236 ORGANISM Genus species
237 Unclassified.
238 COMMENT Annotated using prokka 1.11 from http://www.vicbioinformatics.com.
239 FEATURES Location/Qualifiers
240 source 1..276
241 /organism="Genus species"
242 /mol_type="genomic DNA"
243 /strain="strain"
244 ORIGIN
245 1 tcccaagaag ctgttcagaa tcagaatgag ccgcaacttc gggatgaaaa tgctcacaat
246 61 gacaaatctg tccacggagt gcttaatcca acttaccaag ctgggttacg acgcgacgcc
247 121 gttcaaccag atattgaagc agaacgcaaa aagagagatg agattgaggc tgggaaaagt
248 181 tactgtagcc gacgttttgg cggcgcaacc tgtgacgaca aatctgctca aatttatgcg
249 241 cgcttcgata aaaatgattg gcgtatccaa cctgca
250 //