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comparison prokka.xml @ 15:3a0bd09a41dd draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit f64c36610e6ca2240e4d745a5708d0d02ba4a16d"
author iuc
date Mon, 02 Dec 2019 08:01:42 -0500
parents eaee459f3d69
children bf68eb663bc3
comparison
equal deleted inserted replaced
14:eaee459f3d69 15:3a0bd09a41dd
1 <tool id="prokka" name="Prokka" version="1.13"> 1 <tool id="prokka" name="Prokka" version="1.13+galaxy1">
2 <description>Prokaryotic genome annotation</description> 2 <description>Prokaryotic genome annotation</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.13">prokka</requirement> 4 <requirement type="package" version="1.13">prokka</requirement>
5 </requirements> 5 </requirements>
6 6
181 <tests> 181 <tests>
182 <test> 182 <test>
183 <param name="input" ftype="fasta" value="phiX174.fasta" /> 183 <param name="input" ftype="fasta" value="phiX174.fasta" />
184 <param name="outputs" value="gff,gbk,fna,faa,ffn,sqn,fsa,tbl,tsv,err,txt" /> 184 <param name="outputs" value="gff,gbk,fna,faa,ffn,sqn,fsa,tbl,tsv,err,txt" />
185 <output name="out_gff" file="out.gff" /> 185 <output name="out_gff" file="out.gff" />
186 <output name="out_gbk" file="out.gbk" lines_diff="14" /> 186 <output name="out_gbk" >
187 <assert_contents>
188 <has_text_matching expression="LOCUS" />
189 <has_text_matching expression="//" />
190 </assert_contents>
191 </output>
187 <output name="out_fna" file="out.fna" /> 192 <output name="out_fna" file="out.fna" />
188 <output name="out_faa" file="out.faa" /> 193 <output name="out_faa" file="out.faa" />
189 <output name="out_ffn" file="out.ffn" /> 194 <output name="out_ffn" file="out.ffn" />
190 <output name="out_sqn" file="out.sqn" lines_diff="84" /> 195 <output name="out_sqn" >
196 <assert_contents>
197 <has_text_matching expression="Seq-entry" />
198 <has_text_matching expression="contig2" />
199 </assert_contents>
200 </output>
191 <output name="out_fsa" file="out.fsa" /> 201 <output name="out_fsa" file="out.fsa" />
192 <output name="out_tbl" file="out.tbl" /> 202 <output name="out_tbl" file="out.tbl" />
193 <output name="out_tsv" file="out.tsv" /> 203 <output name="out_tsv" file="out.tsv" />
194 <output name="out_err" file="out.err" /> 204 <output name="out_err" file="out.err" lines_diff="14" />
195 <output name="out_txt" file="out.txt" /> 205 <output name="out_txt" file="out.txt" />
196 <output name="out_log"> 206 <output name="out_log">
197 <assert_contents> 207 <assert_contents>
198 <has_text text="Type 'prokka --citation' for more details." /> 208 <has_text text="Type 'prokka --citation' for more details." />
199 </assert_contents> 209 </assert_contents>