Mercurial > repos > crs4 > prokka

comparison test-data/out.sqn @ 13:a17498c603ec draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
author iuc
date Tue, 21 Mar 2017 10:13:06 -0400
parents 392255fa7ab9
children eaee459f3d69
comparison
equal deleted inserted replaced
12:da479161bbe4 13:a17498c603ec
15 subtype strain , 15 subtype strain ,
16 subname "strain" } } , 16 subname "strain" } } ,
17 gcode 11 } } } , 17 gcode 11 } } } ,
18 molinfo { 18 molinfo {
19 biomol genomic } , 19 biomol genomic } ,
20 comment "Annotated using prokka 1.11 from 20 comment "Annotated using prokka 1.12 from
21 http://www.vicbioinformatics.com" , 21 https://github.com/tseemann/prokka" ,
22 user { 22 user {
23 type 23 type
24 str "NcbiCleanup" , 24 str "NcbiCleanup" ,
25 data { 25 data {
26 { 26 {
35 int 8 } , 35 int 8 } ,
36 { 36 {
37 label 37 label
38 str "month" , 38 str "month" ,
39 data 39 data
40 int 10 } , 40 int 3 } ,
41 { 41 {
42 label 42 label
43 str "day" , 43 str "day" ,
44 data 44 data
45 int 11 } , 45 int 21 } ,
46 { 46 {
47 label 47 label
48 str "year" , 48 str "year" ,
49 data 49 data
50 int 2016 } } } , 50 int 2017 } } } ,
51 create-date 51 create-date
52 std { 52 std {
53 year 2016 , 53 year 2017 ,
54 month 10 , 54 month 3 ,
55 day 11 } } , 55 day 21 } } ,
56 inst { 56 inst {
57 repr raw , 57 repr raw ,
58 mol dna , 58 mol dna ,
59 length 350 , 59 length 350 ,
60 seq-data 60 seq-data
73 mod { 73 mod {
74 { 74 {
75 subtype strain , 75 subtype strain ,
76 subname "strain" } } , 76 subname "strain" } } ,
77 gcode 11 } } } , 77 gcode 11 } } } ,
78 comment "Annotated using prokka 1.11 from 78 comment "Annotated using prokka 1.12 from
79 http://www.vicbioinformatics.com" , 79 https://github.com/tseemann/prokka" ,
80 user { 80 user {
81 type 81 type
82 str "NcbiCleanup" , 82 str "NcbiCleanup" ,
83 data { 83 data {
84 { 84 {
93 int 8 } , 93 int 8 } ,
94 { 94 {
95 label 95 label
96 str "month" , 96 str "month" ,
97 data 97 data
98 int 10 } , 98 int 3 } ,
99 { 99 {
100 label 100 label
101 str "day" , 101 str "day" ,
102 data 102 data
103 int 11 } , 103 int 21 } ,
104 { 104 {
105 label 105 label
106 str "year" , 106 str "year" ,
107 data 107 data
108 int 2016 } } } , 108 int 2017 } } } ,
109 create-date 109 create-date
110 std { 110 std {
111 year 2016 , 111 year 2017 ,
112 month 10 , 112 month 3 ,
113 day 11 } } , 113 day 21 } } ,
114 seq-set { 114 seq-set {
115 seq { 115 seq {
116 id { 116 id {
117 local 117 local
118 str "contig2" } , 118 str "contig2" } ,
232 local 232 local
233 str "contig2" } , 233 str "contig2" } ,
234 qual { 234 qual {
235 { 235 {
236 qual "inference" , 236 qual "inference" ,
237 val "ab initio prediction:Prodigal:2.60" } } , 237 val "ab initio prediction:Prodigal:2.6" } } ,
238 xref { 238 xref {
239 { 239 {
240 data 240 data
241 gene { 241 gene {
242 locus-tag "PROKKA_00001" } } } } , 242 locus-tag "PROKKA_00001" } } } } ,
262 local 262 local
263 str "contig2" } , 263 str "contig2" } ,
264 qual { 264 qual {
265 { 265 {
266 qual "inference" , 266 qual "inference" ,
267 val "ab initio prediction:Prodigal:2.60" } } , 267 val "ab initio prediction:Prodigal:2.6" } } ,
268 xref { 268 xref {
269 { 269 {
270 data 270 data
271 gene { 271 gene {
272 locus-tag "PROKKA_00002" } } } } } } } } , 272 locus-tag "PROKKA_00002" } } } } } } } } ,
284 subtype strain , 284 subtype strain ,
285 subname "strain" } } , 285 subname "strain" } } ,
286 gcode 11 } } } , 286 gcode 11 } } } ,
287 molinfo { 287 molinfo {
288 biomol genomic } , 288 biomol genomic } ,
289 comment "Annotated using prokka 1.11 from 289 comment "Annotated using prokka 1.12 from
290 http://www.vicbioinformatics.com" , 290 https://github.com/tseemann/prokka" ,
291 user { 291 user {
292 type 292 type
293 str "NcbiCleanup" , 293 str "NcbiCleanup" ,
294 data { 294 data {
295 { 295 {
304 int 8 } , 304 int 8 } ,
305 { 305 {
306 label 306 label
307 str "month" , 307 str "month" ,
308 data 308 data
309 int 10 } , 309 int 3 } ,
310 { 310 {
311 label 311 label
312 str "day" , 312 str "day" ,
313 data 313 data
314 int 11 } , 314 int 21 } ,
315 { 315 {
316 label 316 label
317 str "year" , 317 str "year" ,
318 data 318 data
319 int 2016 } } } , 319 int 2017 } } } ,
320 create-date 320 create-date
321 std { 321 std {
322 year 2016 , 322 year 2017 ,
323 month 10 , 323 month 3 ,
324 day 11 } } , 324 day 21 } } ,
325 inst { 325 inst {
326 repr raw , 326 repr raw ,
327 mol dna , 327 mol dna ,
328 length 210 , 328 length 210 ,
329 seq-data 329 seq-data
340 mod { 340 mod {
341 { 341 {
342 subtype strain , 342 subtype strain ,
343 subname "strain" } } , 343 subname "strain" } } ,
344 gcode 11 } } } , 344 gcode 11 } } } ,
345 comment "Annotated using prokka 1.11 from 345 comment "Annotated using prokka 1.12 from
346 http://www.vicbioinformatics.com" , 346 https://github.com/tseemann/prokka" ,
347 user { 347 user {
348 type 348 type
349 str "NcbiCleanup" , 349 str "NcbiCleanup" ,
350 data { 350 data {
351 { 351 {
360 int 8 } , 360 int 8 } ,
361 { 361 {
362 label 362 label
363 str "month" , 363 str "month" ,
364 data 364 data
365 int 10 } , 365 int 3 } ,
366 { 366 {
367 label 367 label
368 str "day" , 368 str "day" ,
369 data 369 data
370 int 11 } , 370 int 21 } ,
371 { 371 {
372 label 372 label
373 str "year" , 373 str "year" ,
374 data 374 data
375 int 2016 } } } , 375 int 2017 } } } ,
376 create-date 376 create-date
377 std { 377 std {
378 year 2016 , 378 year 2017 ,
379 month 10 , 379 month 3 ,
380 day 11 } } , 380 day 21 } } ,
381 seq-set { 381 seq-set {
382 seq { 382 seq {
383 id { 383 id {
384 local 384 local
385 str "contig4" } , 385 str "contig4" } ,
471 local 471 local
472 str "contig4" } , 472 str "contig4" } ,
473 qual { 473 qual {
474 { 474 {
475 qual "inference" , 475 qual "inference" ,
476 val "ab initio prediction:Prodigal:2.60" } } , 476 val "ab initio prediction:Prodigal:2.6" } } ,
477 xref { 477 xref {
478 { 478 {
479 data 479 data
480 gene { 480 gene {
481 locus-tag "PROKKA_00003" } } } } } } } } , 481 locus-tag "PROKKA_00003" } } } } } } } } ,
489 mod { 489 mod {
490 { 490 {
491 subtype strain , 491 subtype strain ,
492 subname "strain" } } , 492 subname "strain" } } ,
493 gcode 11 } } } , 493 gcode 11 } } } ,
494 comment "Annotated using prokka 1.11 from 494 comment "Annotated using prokka 1.12 from
495 http://www.vicbioinformatics.com" , 495 https://github.com/tseemann/prokka" ,
496 user { 496 user {
497 type 497 type
498 str "NcbiCleanup" , 498 str "NcbiCleanup" ,
499 data { 499 data {
500 { 500 {
509 int 8 } , 509 int 8 } ,
510 { 510 {
511 label 511 label
512 str "month" , 512 str "month" ,
513 data 513 data
514 int 10 } , 514 int 3 } ,
515 { 515 {
516 label 516 label
517 str "day" , 517 str "day" ,
518 data 518 data
519 int 11 } , 519 int 21 } ,
520 { 520 {
521 label 521 label
522 str "year" , 522 str "year" ,
523 data 523 data
524 int 2016 } } } , 524 int 2017 } } } ,
525 create-date 525 create-date
526 std { 526 std {
527 year 2016 , 527 year 2017 ,
528 month 10 , 528 month 3 ,
529 day 11 } } , 529 day 21 } } ,
530 seq-set { 530 seq-set {
531 seq { 531 seq {
532 id { 532 id {
533 local 533 local
534 str "contig5" } , 534 str "contig5" } ,
607 local 607 local
608 str "contig5" } , 608 str "contig5" } ,
609 qual { 609 qual {
610 { 610 {
611 qual "inference" , 611 qual "inference" ,
612 val "ab initio prediction:Prodigal:2.60" } } , 612 val "ab initio prediction:Prodigal:2.6" } } ,
613 xref { 613 xref {
614 { 614 {
615 data 615 data
616 gene { 616 gene {
617 locus-tag "PROKKA_00004" } } } } } } } } , 617 locus-tag "PROKKA_00004" } } } } } } } } ,
625 mod { 625 mod {
626 { 626 {
627 subtype strain , 627 subtype strain ,
628 subname "strain" } } , 628 subname "strain" } } ,
629 gcode 11 } } } , 629 gcode 11 } } } ,
630 comment "Annotated using prokka 1.11 from 630 comment "Annotated using prokka 1.12 from
631 http://www.vicbioinformatics.com" , 631 https://github.com/tseemann/prokka" ,
632 user { 632 user {
633 type 633 type
634 str "NcbiCleanup" , 634 str "NcbiCleanup" ,
635 data { 635 data {
636 { 636 {
645 int 8 } , 645 int 8 } ,
646 { 646 {
647 label 647 label
648 str "month" , 648 str "month" ,
649 data 649 data
650 int 10 } , 650 int 3 } ,
651 { 651 {
652 label 652 label
653 str "day" , 653 str "day" ,
654 data 654 data
655 int 11 } , 655 int 21 } ,
656 { 656 {
657 label 657 label
658 str "year" , 658 str "year" ,
659 data 659 data
660 int 2016 } } } , 660 int 2017 } } } ,
661 create-date 661 create-date
662 std { 662 std {
663 year 2016 , 663 year 2017 ,
664 month 10 , 664 month 3 ,
665 day 11 } } , 665 day 21 } } ,
666 seq-set { 666 seq-set {
667 seq { 667 seq {
668 id { 668 id {
669 local 669 local
670 str "contig6" } , 670 str "contig6" } ,
765 local 765 local
766 str "contig6" } , 766 str "contig6" } ,
767 qual { 767 qual {
768 { 768 {
769 qual "inference" , 769 qual "inference" ,
770 val "ab initio prediction:Prodigal:2.60" } } , 770 val "ab initio prediction:Prodigal:2.6" } } ,
771 xref { 771 xref {
772 { 772 {
773 data 773 data
774 gene { 774 gene {
775 locus-tag "PROKKA_00005" } } } } } } } } , 775 locus-tag "PROKKA_00005" } } } } } } } } ,
787 subtype strain , 787 subtype strain ,
788 subname "strain" } } , 788 subname "strain" } } ,
789 gcode 11 } } } , 789 gcode 11 } } } ,
790 molinfo { 790 molinfo {
791 biomol genomic } , 791 biomol genomic } ,
792 comment "Annotated using prokka 1.11 from 792 comment "Annotated using prokka 1.12 from
793 http://www.vicbioinformatics.com" , 793 https://github.com/tseemann/prokka" ,
794 user { 794 user {
795 type 795 type
796 str "NcbiCleanup" , 796 str "NcbiCleanup" ,
797 data { 797 data {
798 { 798 {
807 int 8 } , 807 int 8 } ,
808 { 808 {
809 label 809 label
810 str "month" , 810 str "month" ,
811 data 811 data
812 int 10 } , 812 int 3 } ,
813 { 813 {
814 label 814 label
815 str "day" , 815 str "day" ,
816 data 816 data
817 int 11 } , 817 int 21 } ,
818 { 818 {
819 label 819 label
820 str "year" , 820 str "year" ,
821 data 821 data
822 int 2016 } } } , 822 int 2017 } } } ,
823 create-date 823 create-date
824 std { 824 std {
825 year 2016 , 825 year 2017 ,
826 month 10 , 826 month 3 ,
827 day 11 } } , 827 day 21 } } ,
828 inst { 828 inst {
829 repr raw , 829 repr raw ,
830 mol dna , 830 mol dna ,
831 length 276 , 831 length 276 ,
832 seq-data 832 seq-data