Mercurial > repos > crs4 > prokka
comparison prokka.xml @ 12:da479161bbe4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 89e3a62dd6cbc8bcec84d08c1710bfb4e7f5938f
author | iuc |
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date | Fri, 20 Jan 2017 03:39:08 -0500 |
parents | fd4b2f03cfc6 |
children | a17498c603ec |
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11:fd4b2f03cfc6 | 12:da479161bbe4 |
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144 </param> | 144 </param> |
145 | 145 |
146 </inputs> | 146 </inputs> |
147 <outputs> | 147 <outputs> |
148 <data name="out_gff" format="gff" label="${tool.name} on ${on_string}: gff" from_work_dir="outdir/prokka.gff"> | 148 <data name="out_gff" format="gff" label="${tool.name} on ${on_string}: gff" from_work_dir="outdir/prokka.gff"> |
149 <filter>'gff' in outputs</filter> | 149 <filter>outputs and 'gff' in outputs</filter> |
150 </data> | 150 </data> |
151 <data name="out_gbk" format="txt" label="${tool.name} on ${on_string}: gbk" from_work_dir="outdir/prokka.gbk"> | 151 <data name="out_gbk" format="txt" label="${tool.name} on ${on_string}: gbk" from_work_dir="outdir/prokka.gbk"> |
152 <filter>'gbk' in outputs</filter> | 152 <filter>outputs and 'gbk' in outputs</filter> |
153 </data> | 153 </data> |
154 <data name="out_fna" format="fasta" label="${tool.name} on ${on_string}: fna" from_work_dir="outdir/prokka.fna"> | 154 <data name="out_fna" format="fasta" label="${tool.name} on ${on_string}: fna" from_work_dir="outdir/prokka.fna"> |
155 <filter>'fna' in outputs</filter> | 155 <filter>outputs and 'fna' in outputs</filter> |
156 </data> | 156 </data> |
157 <data name="out_faa" format="fasta" label="${tool.name} on ${on_string}: faa" from_work_dir="outdir/prokka.faa"> | 157 <data name="out_faa" format="fasta" label="${tool.name} on ${on_string}: faa" from_work_dir="outdir/prokka.faa"> |
158 <filter>'faa' in outputs</filter> | 158 <filter>outputs and 'faa' in outputs</filter> |
159 </data> | 159 </data> |
160 <data name="out_ffn" format="fasta" label="${tool.name} on ${on_string}: ffn" from_work_dir="outdir/prokka.ffn"> | 160 <data name="out_ffn" format="fasta" label="${tool.name} on ${on_string}: ffn" from_work_dir="outdir/prokka.ffn"> |
161 <filter>'ffn' in outputs</filter> | 161 <filter>outputs and 'ffn' in outputs</filter> |
162 </data> | 162 </data> |
163 <data name="out_sqn" format="asn1" label="${tool.name} on ${on_string}: sqn" from_work_dir="outdir/prokka.sqn"> | 163 <data name="out_sqn" format="asn1" label="${tool.name} on ${on_string}: sqn" from_work_dir="outdir/prokka.sqn"> |
164 <filter>'sqn' in outputs</filter> | 164 <filter>outputs and 'sqn' in outputs</filter> |
165 </data> | 165 </data> |
166 <data name="out_fsa" format="fasta" label="${tool.name} on ${on_string}: fsa" from_work_dir="outdir/prokka.fsa"> | 166 <data name="out_fsa" format="fasta" label="${tool.name} on ${on_string}: fsa" from_work_dir="outdir/prokka.fsa"> |
167 <filter>'fsa' in outputs</filter> | 167 <filter>outputs and 'fsa' in outputs</filter> |
168 </data> | 168 </data> |
169 <data name="out_tbl" format="txt" label="${tool.name} on ${on_string}: tbl" from_work_dir="outdir/prokka.tbl"> | 169 <data name="out_tbl" format="txt" label="${tool.name} on ${on_string}: tbl" from_work_dir="outdir/prokka.tbl"> |
170 <filter>'tbl' in outputs</filter> | 170 <filter>outputs and 'tbl' in outputs</filter> |
171 </data> | 171 </data> |
172 <data name="out_err" format="txt" label="${tool.name} on ${on_string}: err" from_work_dir="outdir/prokka.err"> | 172 <data name="out_err" format="txt" label="${tool.name} on ${on_string}: err" from_work_dir="outdir/prokka.err"> |
173 <filter>'err' in outputs</filter> | 173 <filter>outputs and 'err' in outputs</filter> |
174 </data> | 174 </data> |
175 <data name="out_txt" format="txt" label="${tool.name} on ${on_string}: txt" from_work_dir="outdir/prokka.txt"> | 175 <data name="out_txt" format="txt" label="${tool.name} on ${on_string}: txt" from_work_dir="outdir/prokka.txt"> |
176 <filter>'txt' in outputs</filter> | 176 <filter>outputs and 'txt' in outputs</filter> |
177 </data> | 177 </data> |
178 <data name="out_log" format="txt" label="${tool.name} on ${on_string}: log" from_work_dir="outdir/prokka.log" /> | 178 <data name="out_log" format="txt" label="${tool.name} on ${on_string}: log" from_work_dir="outdir/prokka.log" /> |
179 </outputs> | 179 </outputs> |
180 <tests> | 180 <tests> |
181 <test> | 181 <test> |