Mercurial > repos > crs4 > prokka

comparison test-data/out.err @ 14:eaee459f3d69 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 9019ffd38b2b6692fc24c9b41ab2c2539050b01f
author iuc
date Wed, 28 Mar 2018 12:38:42 -0400
parents a17498c603ec
children bf68eb663bc3
comparison
equal deleted inserted replaced
13:a17498c603ec 14:eaee459f3d69
45 outdir/prokka:contig6 (length 1960) 45 outdir/prokka:contig6 (length 1960)
46 outdir/prokka:contig7 (length 276) 46 outdir/prokka:contig7 (length 276)
47 47
48 DiscRep_ALL:FEATURE_LOCATION_CONFLICT::5 features have inconsistent gene locations. 48 DiscRep_ALL:FEATURE_LOCATION_CONFLICT::5 features have inconsistent gene locations.
49 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist 49 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
50 outdir/prokka:CDS hypothetical protein contig2:40-498 PROKKA_00001 50 outdir/prokka:CDS hypothetical protein contig2:40-498 HMJLFLJH_00001
51 51
52 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist 52 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
53 outdir/prokka:CDS hypothetical protein contig2:498-614 PROKKA_00002 53 outdir/prokka:CDS hypothetical protein contig2:498-614 HMJLFLJH_00002
54 54
55 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist 55 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
56 outdir/prokka:CDS hypothetical protein contig4:21-884 PROKKA_00003 56 outdir/prokka:CDS hypothetical protein contig4:21-884 HMJLFLJH_00003
57 57
58 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist 58 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
59 outdir/prokka:CDS hypothetical protein contig5:275-406 PROKKA_00004 59 outdir/prokka:CDS hypothetical protein contig5:275-406 HMJLFLJH_00004
60 60
61 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist 61 DiscRep_SUB:FEATURE_LOCATION_CONFLICT::Coding region xref gene does not exist
62 outdir/prokka:CDS hypothetical protein contig6:6-767 PROKKA_00005 62 outdir/prokka:CDS hypothetical protein contig6:6-767 HMJLFLJH_00005
63 63
64 DiscRep_ALL:NO_ANNOTATION::3 bioseqs have no features 64 DiscRep_ALL:NO_ANNOTATION::3 bioseqs have no features
65 outdir/prokka:contig1 (length 350) 65 outdir/prokka:contig1 (length 350)
66 outdir/prokka:contig3 (length 210) 66 outdir/prokka:contig3 (length 210)
67 outdir/prokka:contig7 (length 276) 67 outdir/prokka:contig7 (length 276)
68 68
69 DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences. 69 DiscRep_ALL:DISC_QUALITY_SCORES::Quality scores are missing on all sequences.
70 70
71 DiscRep_ALL:ONCALLER_COMMENT_PRESENT::7 comment descriptors were found (all same) 71 DiscRep_ALL:ONCALLER_COMMENT_PRESENT::7 comment descriptors were found (all same)
72 outdir/prokka:contig1:Annotated using prokka 1.12 from https://github.com/tseemann/prokka 72 outdir/prokka:contig1:Annotated using prokka 1.13 from https://github.com/tseemann/prokka
73 outdir/prokka:contig2:Annotated using prokka 1.12 from https://github.com/tseemann/prokka 73 outdir/prokka:contig2:Annotated using prokka 1.13 from https://github.com/tseemann/prokka
74 outdir/prokka:contig3:Annotated using prokka 1.12 from https://github.com/tseemann/prokka 74 outdir/prokka:contig3:Annotated using prokka 1.13 from https://github.com/tseemann/prokka
75 outdir/prokka:contig4:Annotated using prokka 1.12 from https://github.com/tseemann/prokka 75 outdir/prokka:contig4:Annotated using prokka 1.13 from https://github.com/tseemann/prokka
76 outdir/prokka:contig5:Annotated using prokka 1.12 from https://github.com/tseemann/prokka 76 outdir/prokka:contig5:Annotated using prokka 1.13 from https://github.com/tseemann/prokka
77 outdir/prokka:contig6:Annotated using prokka 1.12 from https://github.com/tseemann/prokka 77 outdir/prokka:contig6:Annotated using prokka 1.13 from https://github.com/tseemann/prokka
78 outdir/prokka:contig7:Annotated using prokka 1.12 from https://github.com/tseemann/prokka 78 outdir/prokka:contig7:Annotated using prokka 1.13 from https://github.com/tseemann/prokka
79 79
80 DiscRep_ALL:SHORT_PROT_SEQUENCES::2 protein sequences are shorter than 50 aa. 80 DiscRep_ALL:SHORT_PROT_SEQUENCES::2 protein sequences are shorter than 50 aa.
81 outdir/prokka:contig2_2 (length 38) 81 outdir/prokka:contig2_2 (length 38)
82 outdir/prokka:contig5_1 (length 43) 82 outdir/prokka:contig5_1 (length 43)
83 83