diff test-data/out.sqn @ 8:392255fa7ab9 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 9a92d439f147a5cf2370e0686854911107de1144
author iuc
date Fri, 28 Oct 2016 13:03:19 -0400
parents
children a17498c603ec
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out.sqn	Fri Oct 28 13:03:19 2016 -0400
@@ -0,0 +1,836 @@
+Seq-entry ::= set {
+  class genbank ,
+  seq-set {
+    seq {
+      id {
+        local
+          str "contig1" } ,
+      descr {
+        source {
+          org {
+            taxname "Genus species" ,
+            orgname {
+              mod {
+                {
+                  subtype strain ,
+                  subname "strain" } } ,
+              gcode 11 } } } ,
+        molinfo {
+          biomol genomic } ,
+        comment "Annotated using prokka 1.11 from
+ http://www.vicbioinformatics.com" ,
+        user {
+          type
+            str "NcbiCleanup" ,
+          data {
+            {
+              label
+                str "method" ,
+              data
+                str "SeriousSeqEntryCleanup" } ,
+            {
+              label
+                str "version" ,
+              data
+                int 8 } ,
+            {
+              label
+                str "month" ,
+              data
+                int 10 } ,
+            {
+              label
+                str "day" ,
+              data
+                int 11 } ,
+            {
+              label
+                str "year" ,
+              data
+                int 2016 } } } ,
+        create-date
+          std {
+            year 2016 ,
+            month 10 ,
+            day 11 } } ,
+      inst {
+        repr raw ,
+        mol dna ,
+        length 350 ,
+        seq-data
+          iupacna "GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGA
+AAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAG
+AAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACTAACGATTCTGTCAAA
+AACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACA
+TTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATC" } } ,
+    set {
+      class nuc-prot ,
+      descr {
+        source {
+          org {
+            taxname "Genus species" ,
+            orgname {
+              mod {
+                {
+                  subtype strain ,
+                  subname "strain" } } ,
+              gcode 11 } } } ,
+        comment "Annotated using prokka 1.11 from
+ http://www.vicbioinformatics.com" ,
+        user {
+          type
+            str "NcbiCleanup" ,
+          data {
+            {
+              label
+                str "method" ,
+              data
+                str "SeriousSeqEntryCleanup" } ,
+            {
+              label
+                str "version" ,
+              data
+                int 8 } ,
+            {
+              label
+                str "month" ,
+              data
+                int 10 } ,
+            {
+              label
+                str "day" ,
+              data
+                int 11 } ,
+            {
+              label
+                str "year" ,
+              data
+                int 2016 } } } ,
+        create-date
+          std {
+            year 2016 ,
+            month 10 ,
+            day 11 } } ,
+      seq-set {
+        seq {
+          id {
+            local
+              str "contig2" } ,
+          descr {
+            molinfo {
+              biomol genomic } } ,
+          inst {
+            repr raw ,
+            mol dna ,
+            length 840 ,
+            seq-data
+              iupacna "TGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTG
+AACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAG
+ATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTT
+GCGTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTT
+ATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATG
+GCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTA
+CTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCGGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGG
+CGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGG
+TCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCG
+TATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGT
+TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGA
+CTCTA" } } ,
+        seq {
+          id {
+            local
+              str "contig2_1" } ,
+          descr {
+            title "hypothetical protein PROKKA_00001 [Genus species]" ,
+            molinfo {
+              biomol peptide ,
+              tech concept-trans } } ,
+          inst {
+            repr raw ,
+            mol aa ,
+            length 152 ,
+            seq-data
+              ncbieaa "MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIATDRSRARRCV
+EACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFTENIINGVERPVKAAELFAFTLRVRAGNTD
+VLTDAEENVRQKLRAEGVM" } ,
+          annot {
+            {
+              data
+                ftable {
+                  {
+                    id
+                      local
+                        id 3 ,
+                    data
+                      prot {
+                        name {
+                          "hypothetical protein" } } ,
+                    location
+                      int {
+                        from 0 ,
+                        to 151 ,
+                        id
+                          local
+                            str "contig2_1" } } } } } } ,
+        seq {
+          id {
+            local
+              str "contig2_2" } ,
+          descr {
+            title "hypothetical protein PROKKA_00002 [Genus species]" ,
+            molinfo {
+              biomol peptide ,
+              tech concept-trans } } ,
+          inst {
+            repr raw ,
+            mol aa ,
+            length 38 ,
+            seq-data
+              ncbieaa "MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF" } ,
+          annot {
+            {
+              data
+                ftable {
+                  {
+                    id
+                      local
+                        id 4 ,
+                    data
+                      prot {
+                        name {
+                          "hypothetical protein" } } ,
+                    location
+                      int {
+                        from 0 ,
+                        to 37 ,
+                        id
+                          local
+                            str "contig2_2" } } } } } } } ,
+      annot {
+        {
+          data
+            ftable {
+              {
+                id
+                  local
+                    id 1 ,
+                data
+                  cdregion {
+                    frame one ,
+                    code {
+                      id 11 } } ,
+                product
+                  whole
+                    local
+                      str "contig2_1" ,
+                location
+                  int {
+                    from 39 ,
+                    to 497 ,
+                    strand plus ,
+                    id
+                      local
+                        str "contig2" } ,
+                qual {
+                  {
+                    qual "inference" ,
+                    val "ab initio prediction:Prodigal:2.60" } } ,
+                xref {
+                  {
+                    data
+                      gene {
+                        locus-tag "PROKKA_00001" } } } } ,
+              {
+                id
+                  local
+                    id 2 ,
+                data
+                  cdregion {
+                    frame one ,
+                    code {
+                      id 11 } } ,
+                product
+                  whole
+                    local
+                      str "contig2_2" ,
+                location
+                  int {
+                    from 497 ,
+                    to 613 ,
+                    strand plus ,
+                    id
+                      local
+                        str "contig2" } ,
+                qual {
+                  {
+                    qual "inference" ,
+                    val "ab initio prediction:Prodigal:2.60" } } ,
+                xref {
+                  {
+                    data
+                      gene {
+                        locus-tag "PROKKA_00002" } } } } } } } } ,
+    seq {
+      id {
+        local
+          str "contig3" } ,
+      descr {
+        source {
+          org {
+            taxname "Genus species" ,
+            orgname {
+              mod {
+                {
+                  subtype strain ,
+                  subname "strain" } } ,
+              gcode 11 } } } ,
+        molinfo {
+          biomol genomic } ,
+        comment "Annotated using prokka 1.11 from
+ http://www.vicbioinformatics.com" ,
+        user {
+          type
+            str "NcbiCleanup" ,
+          data {
+            {
+              label
+                str "method" ,
+              data
+                str "SeriousSeqEntryCleanup" } ,
+            {
+              label
+                str "version" ,
+              data
+                int 8 } ,
+            {
+              label
+                str "month" ,
+              data
+                int 10 } ,
+            {
+              label
+                str "day" ,
+              data
+                int 11 } ,
+            {
+              label
+                str "year" ,
+              data
+                int 2016 } } } ,
+        create-date
+          std {
+            year 2016 ,
+            month 10 ,
+            day 11 } } ,
+      inst {
+        repr raw ,
+        mol dna ,
+        length 210 ,
+        seq-data
+          iupacna "CTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATT
+AAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTT
+CTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACA" } } ,
+    set {
+      class nuc-prot ,
+      descr {
+        source {
+          org {
+            taxname "Genus species" ,
+            orgname {
+              mod {
+                {
+                  subtype strain ,
+                  subname "strain" } } ,
+              gcode 11 } } } ,
+        comment "Annotated using prokka 1.11 from
+ http://www.vicbioinformatics.com" ,
+        user {
+          type
+            str "NcbiCleanup" ,
+          data {
+            {
+              label
+                str "method" ,
+              data
+                str "SeriousSeqEntryCleanup" } ,
+            {
+              label
+                str "version" ,
+              data
+                int 8 } ,
+            {
+              label
+                str "month" ,
+              data
+                int 10 } ,
+            {
+              label
+                str "day" ,
+              data
+                int 11 } ,
+            {
+              label
+                str "year" ,
+              data
+                int 2016 } } } ,
+        create-date
+          std {
+            year 2016 ,
+            month 10 ,
+            day 11 } } ,
+      seq-set {
+        seq {
+          id {
+            local
+              str "contig4" } ,
+          descr {
+            molinfo {
+              biomol genomic } } ,
+          inst {
+            repr raw ,
+            mol dna ,
+            length 1260 ,
+            seq-data
+              iupacna "ACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCT
+TAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGAC
+TGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCA
+TACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGA
+CGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAAC
+GTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGG
+CACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGC
+TTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGT
+TTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTC
+TCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTAT
+TCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGAC
+CGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAACGCC
+GAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGCTTAGGAGTTTA
+ATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGTTCTCACTTCTGTTACTCCA
+GCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCAACGTTATATTTTGATAGTTTGACGGTTAATGCT
+GGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTGTCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCT
+GATATTGCTTTTGATGCCGACCCTAAATTTTTTGC" } } ,
+        seq {
+          id {
+            local
+              str "contig4_1" } ,
+          descr {
+            title "hypothetical protein PROKKA_00003 [Genus species]" ,
+            molinfo {
+              biomol peptide ,
+              tech concept-trans } } ,
+          inst {
+            repr raw ,
+            mol aa ,
+            length 287 ,
+            seq-data
+              ncbieaa "MPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQMTTSTTSIDIMG
+LQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRSNLWASGYDVDGTDQTSLGQFSGRVQQTYKHSV
+PRFFVPEHGTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPVLYGNLPPREISMKDVFRSGDSSKKFKIAEGQW
+YRYAPSYVSPAYHLLEGFPFIQEPPSGDLQERVLIRHHDYDQCFQSVQLLQWNSQVKFNVTVYRNLPTTRDSIMTS" } ,
+          annot {
+            {
+              data
+                ftable {
+                  {
+                    id
+                      local
+                        id 6 ,
+                    data
+                      prot {
+                        name {
+                          "hypothetical protein" } } ,
+                    location
+                      int {
+                        from 0 ,
+                        to 286 ,
+                        id
+                          local
+                            str "contig4_1" } } } } } } } ,
+      annot {
+        {
+          data
+            ftable {
+              {
+                id
+                  local
+                    id 5 ,
+                data
+                  cdregion {
+                    frame one ,
+                    code {
+                      id 11 } } ,
+                product
+                  whole
+                    local
+                      str "contig4_1" ,
+                location
+                  int {
+                    from 20 ,
+                    to 883 ,
+                    strand plus ,
+                    id
+                      local
+                        str "contig4" } ,
+                qual {
+                  {
+                    qual "inference" ,
+                    val "ab initio prediction:Prodigal:2.60" } } ,
+                xref {
+                  {
+                    data
+                      gene {
+                        locus-tag "PROKKA_00003" } } } } } } } } ,
+    set {
+      class nuc-prot ,
+      descr {
+        source {
+          org {
+            taxname "Genus species" ,
+            orgname {
+              mod {
+                {
+                  subtype strain ,
+                  subname "strain" } } ,
+              gcode 11 } } } ,
+        comment "Annotated using prokka 1.11 from
+ http://www.vicbioinformatics.com" ,
+        user {
+          type
+            str "NcbiCleanup" ,
+          data {
+            {
+              label
+                str "method" ,
+              data
+                str "SeriousSeqEntryCleanup" } ,
+            {
+              label
+                str "version" ,
+              data
+                int 8 } ,
+            {
+              label
+                str "month" ,
+              data
+                int 10 } ,
+            {
+              label
+                str "day" ,
+              data
+                int 11 } ,
+            {
+              label
+                str "year" ,
+              data
+                int 2016 } } } ,
+        create-date
+          std {
+            year 2016 ,
+            month 10 ,
+            day 11 } } ,
+      seq-set {
+        seq {
+          id {
+            local
+              str "contig5" } ,
+          descr {
+            molinfo {
+              biomol genomic } } ,
+          inst {
+            repr raw ,
+            mol dna ,
+            length 490 ,
+            seq-data
+              iupacna "CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTGCCTAT
+GATGTTTATCCTTTGAATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCC
+CGTACGCCGGGCAATAACGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTACTAAATGCCGCGGATTGGTT
+TCGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATTTATGTTTGGTGCTATTGCTG
+GCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGGTGGCA
+TTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCT
+CTAATGTTCCTAACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTG" } } ,
+        seq {
+          id {
+            local
+              str "contig5_1" } ,
+          descr {
+            title "hypothetical protein PROKKA_00004 [Genus species]" ,
+            molinfo {
+              biomol peptide ,
+              tech concept-trans } } ,
+          inst {
+            repr raw ,
+            mol aa ,
+            length 43 ,
+            seq-data
+              ncbieaa "MVLLLAVLLLLLLVAPCLNCLEAVKKPPPVAFKVMCLLPITIL" } ,
+          annot {
+            {
+              data
+                ftable {
+                  {
+                    id
+                      local
+                        id 8 ,
+                    data
+                      prot {
+                        name {
+                          "hypothetical protein" } } ,
+                    location
+                      int {
+                        from 0 ,
+                        to 42 ,
+                        id
+                          local
+                            str "contig5_1" } } } } } } } ,
+      annot {
+        {
+          data
+            ftable {
+              {
+                id
+                  local
+                    id 7 ,
+                data
+                  cdregion {
+                    frame one ,
+                    code {
+                      id 11 } } ,
+                product
+                  whole
+                    local
+                      str "contig5_1" ,
+                location
+                  int {
+                    from 274 ,
+                    to 405 ,
+                    strand plus ,
+                    id
+                      local
+                        str "contig5" } ,
+                qual {
+                  {
+                    qual "inference" ,
+                    val "ab initio prediction:Prodigal:2.60" } } ,
+                xref {
+                  {
+                    data
+                      gene {
+                        locus-tag "PROKKA_00004" } } } } } } } } ,
+    set {
+      class nuc-prot ,
+      descr {
+        source {
+          org {
+            taxname "Genus species" ,
+            orgname {
+              mod {
+                {
+                  subtype strain ,
+                  subname "strain" } } ,
+              gcode 11 } } } ,
+        comment "Annotated using prokka 1.11 from
+ http://www.vicbioinformatics.com" ,
+        user {
+          type
+            str "NcbiCleanup" ,
+          data {
+            {
+              label
+                str "method" ,
+              data
+                str "SeriousSeqEntryCleanup" } ,
+            {
+              label
+                str "version" ,
+              data
+                int 8 } ,
+            {
+              label
+                str "month" ,
+              data
+                int 10 } ,
+            {
+              label
+                str "day" ,
+              data
+                int 11 } ,
+            {
+              label
+                str "year" ,
+              data
+                int 2016 } } } ,
+        create-date
+          std {
+            year 2016 ,
+            month 10 ,
+            day 11 } } ,
+      seq-set {
+        seq {
+          id {
+            local
+              str "contig6" } ,
+          descr {
+            molinfo {
+              biomol genomic } } ,
+          inst {
+            repr raw ,
+            mol dna ,
+            length 1960 ,
+            seq-data
+              iupacna "GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCAC
+TTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCG
+TGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGT
+TGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAA
+TGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAA
+TGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCA
+ACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAATGACCAAAT
+CAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGACTTAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCTCTTC
+TCATATTGGCGCTACTGCAAAGGATATTTCTAATGTCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTTTTCATGG
+TATTGATAAAGCTGTTGCCGATACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTC
+TAGGAAATAACCGTCAGGATTGACACCCTCCCAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGCTTTTTTATGGT
+TCGTTCTTATTACCCTTCTGAATGTCACGCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTATTGA
+GGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGCATCAAGCTCTT
+GGAAGAGATTCTGTCTTTTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATGTTGACGGCCATAAGGCTGC
+TTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGAATTGGCACAATGCTACAATGTGCTCCC
+CCAACTTGATATTAATAACACTATAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGT
+TACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATAATTACCCCAAAAAGAA
+AGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTT
+GATGAATGCAATGCGACAGGCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATT
+AGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGG
+TCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGCCGTCT
+TCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAA
+TCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGA
+CGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGT
+TGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATG
+GAACAACTCACTAAAAACCAAGCTGTCGCTACT" } } ,
+        seq {
+          id {
+            local
+              str "contig6_1" } ,
+          descr {
+            title "hypothetical protein PROKKA_00005 [Genus species]" ,
+            molinfo {
+              biomol peptide ,
+              tech concept-trans } } ,
+          inst {
+            repr raw ,
+            mol aa ,
+            length 253 ,
+            seq-data
+              ncbieaa "MAKAGKGLLEGTLQAGTSAVSDKLLDLVGLGGKSAADKGKDTRDYLAAAFPELNA
+WERAGADASSAGMVDAGFENQKELTKMQLDNQKEIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLAYQQKESTA
+RVASIMENTNLSKQQQVSEIMRQMLTQAQTAGQYFTNDQIKEMTRKVSAEVDLVHQQTQNQRYGSSHIGATAKDISNV
+VTDAASGVVDIFHGIDKAVADTWNNFWKDGKADGIGSNLSRK" } ,
+          annot {
+            {
+              data
+                ftable {
+                  {
+                    id
+                      local
+                        id 10 ,
+                    data
+                      prot {
+                        name {
+                          "hypothetical protein" } } ,
+                    location
+                      int {
+                        from 0 ,
+                        to 252 ,
+                        id
+                          local
+                            str "contig6_1" } } } } } } } ,
+      annot {
+        {
+          data
+            ftable {
+              {
+                id
+                  local
+                    id 9 ,
+                data
+                  cdregion {
+                    frame one ,
+                    code {
+                      id 11 } } ,
+                product
+                  whole
+                    local
+                      str "contig6_1" ,
+                location
+                  int {
+                    from 5 ,
+                    to 766 ,
+                    strand plus ,
+                    id
+                      local
+                        str "contig6" } ,
+                qual {
+                  {
+                    qual "inference" ,
+                    val "ab initio prediction:Prodigal:2.60" } } ,
+                xref {
+                  {
+                    data
+                      gene {
+                        locus-tag "PROKKA_00005" } } } } } } } } ,
+    seq {
+      id {
+        local
+          str "contig7" } ,
+      descr {
+        source {
+          org {
+            taxname "Genus species" ,
+            orgname {
+              mod {
+                {
+                  subtype strain ,
+                  subname "strain" } } ,
+              gcode 11 } } } ,
+        molinfo {
+          biomol genomic } ,
+        comment "Annotated using prokka 1.11 from
+ http://www.vicbioinformatics.com" ,
+        user {
+          type
+            str "NcbiCleanup" ,
+          data {
+            {
+              label
+                str "method" ,
+              data
+                str "SeriousSeqEntryCleanup" } ,
+            {
+              label
+                str "version" ,
+              data
+                int 8 } ,
+            {
+              label
+                str "month" ,
+              data
+                int 10 } ,
+            {
+              label
+                str "day" ,
+              data
+                int 11 } ,
+            {
+              label
+                str "year" ,
+              data
+                int 2016 } } } ,
+        create-date
+          std {
+            year 2016 ,
+            month 10 ,
+            day 11 } } ,
+      inst {
+        repr raw ,
+        mol dna ,
+        length 276 ,
+        seq-data
+          iupacna "TCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAA
+TGACAAATCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGA
+AGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGTGA
+CGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCA" } } } }