Mercurial > repos > crs4 > prokka
diff tool_dependencies.xml @ 1:4b6f16a79fe4 draft
Add txt output file.
Use a definition list instead of a block quote in <help>.
Correct 2 dependency minimum versions.
author | crs4 |
---|---|
date | Thu, 26 Sep 2013 12:39:52 -0400 |
parents | 95505a9fa26f |
children | 4bafaa074484 |
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--- a/tool_dependencies.xml Tue Sep 10 13:11:26 2013 -0400 +++ b/tool_dependencies.xml Thu Sep 26 12:39:52 2013 -0400 @@ -31,10 +31,10 @@ <readme> Dependencies of Prokka which needs to be installed separately: - Perl core modules: File::Copy, FindBin, Getopt::Long, List::Util, Scalar::Util, Time::Piece, Time::Seconds; -- Perl modules: Bio::SeqIO from BioPerl ( http://search.cpan.org/dist/BioPerl/ ) >= 1.6.1, XML::Simple ( http://search.cpan.org/dist/XML-Simple/ ); +- Perl modules: Bio::SeqIO from BioPerl ( http://search.cpan.org/dist/BioPerl/ ) >= 1.6.900, XML::Simple ( http://search.cpan.org/dist/XML-Simple/ ); - Prodigal ( http://prodigal.ornl.gov/ ) >= 2.60 ; - tbl2asn ( http://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/ ) >= 21.0 ; -- GNU Parallel ( http://www.gnu.org/software/parallel/ ) >= 20120322 ; +- GNU Parallel ( http://www.gnu.org/software/parallel/ ) >= 20130422 ; - Barrnap ( http://www.vicbioinformatics.com/software.barrnap.shtml ) >= 0.1 . Change the PROKKA_SITE_OPTIONS variable in the installed env.sh file to adjust the number of CPUs to use (--cpus).