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diff prokka.xml @ 4:5c0030f52b83 draft

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Support Prokka 1.8. Depend on package_minced_0_1_4 and package_tbl2asn_22_4 . Update citation.
author crs4
date Wed, 08 Jan 2014 04:29:37 -0500
parents fffa1ae330ae
children 3ad7ef0ba385
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--- a/prokka.xml	Mon Dec 09 04:58:14 2013 -0500
+++ b/prokka.xml	Wed Jan 08 04:29:37 2014 -0500
@@ -1,15 +1,16 @@
-<tool id="prokka" name="Prokka" version="1.2.0">
+<tool id="prokka" name="Prokka" version="1.3.0">
   <description>prokaryotic genome annotation</description>
   <requirements>
     <requirement type="package" version="2.2.28">blast+</requirement>
     <requirement type="package" version="3.1b1">hmmer</requirement>
     <requirement type="package" version="1.2.36">aragorn</requirement>
     <requirement type="package" version="2.60">prodigal</requirement>
-    <requirement type="binary">tbl2asn</requirement>
+    <requirement type="package" version="22.4">tbl2asn</requirement>
     <requirement type="package" version="20131122">gnu_parallel</requirement>
     <requirement type="package" version="0.3">barrnap</requirement>
     <requirement type="package" version="1.1">infernal</requirement>
-    <requirement type="package" version="1.7">prokka</requirement>
+    <requirement type="package" version="0.1.4">minced</requirement>
+    <requirement type="package" version="1.8">prokka</requirement>
   </requirements>
   <version_command>prokka --version</version_command>
   <command>
@@ -193,7 +194,7 @@
 .. |Cuccuru2013| replace:: Cuccuru, G., Orsini, M., Pinna, A., Sbardellati, A., Soranzo, N., Travaglione, A., Uva, P., Zanetti, G., Fotia, G. (2013) Orione, a web-based framework for NGS analysis in microbiology. *Submitted*
 .. _Cuccuru2013: http://orione.crs4.it/
 
-This tool uses `Prokka`_, which is licensed separately. Please cite Seemann T. Prokka: Prokaryotic Genome Annotation System (in preparation).
+This tool uses `Prokka`_, which is licensed separately. Please cite Seemann, T. (2013) Prokka: Rapid Prokaryotic Genome Annotation. *Submitted*
 
 .. _Prokka: http://www.vicbioinformatics.com/software.prokka.shtml
   </help>