--- a/prokka.xml	Fri Jan 20 03:39:08 2017 -0500
+++ b/prokka.xml	Tue Mar 21 10:13:06 2017 -0400
@@ -1,7 +1,7 @@
-<tool id="prokka" name="Prokka" version="1.11.1">
+<tool id="prokka" name="Prokka" version="1.12.0">
     <description>prokaryotic genome annotation</description>
     <requirements>
-        <requirement type="package" version="1.11">prokka</requirement>
+        <requirement type="package" version="1.12">prokka</requirement>
     </requirements>
     <!-- Need to use stdio because prokka writes some warnings on stderr (due to the "use warnings" Perl pragma) -->
     <stdio>
@@ -189,7 +189,7 @@
             <output name="out_sqn" file="out.sqn" lines_diff="84" />
             <output name="out_fsa" file="out.fsa" />
             <output name="out_tbl" file="out.tbl" />
-            <output name="out.err" file="out.err" />
+            <output name="out_err" file="out.err" />
             <output name="out_txt" file="out.txt" />
             <output name="out_log">
                 <assert_contents>
@@ -203,7 +203,7 @@
 
 Prokka_ is a software tool to rapidly annotate bacterial, archaeal and viral genomes, and produce output files that require only minor tweaking to submit to GenBank/ENA/DDBJ.
 
-.. _Prokka: http://www.vicbioinformatics.com/software.prokka.shtml
+.. _Prokka: http://github.com/tseemann/prokka
 
 **Output files**
 
@@ -219,7 +219,7 @@
 
 You can use this tool only if you agree to the license terms of: `Prokka`_.
 
-.. _Prokka: http://www.vicbioinformatics.com/software.prokka.shtml
+.. _Prokka: http://github.com/tseemann/prokka
     ]]></help>
     <citations>
         <citation type="doi">10.1093/bioinformatics/btu135</citation>