Mercurial > repos > crs4 > prokka

diff test-data/out.sqn @ 13:a17498c603ec draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
author iuc
date Tue, 21 Mar 2017 10:13:06 -0400
parents 392255fa7ab9
children eaee459f3d69
line wrap: on
line diff
--- a/test-data/out.sqn	Fri Jan 20 03:39:08 2017 -0500
+++ b/test-data/out.sqn	Tue Mar 21 10:13:06 2017 -0400
@@ -17,8 +17,8 @@
               gcode 11 } } } ,
         molinfo {
           biomol genomic } ,
-        comment "Annotated using prokka 1.11 from
- http://www.vicbioinformatics.com" ,
+        comment "Annotated using prokka 1.12 from
+ https://github.com/tseemann/prokka" ,
         user {
           type
             str "NcbiCleanup" ,
@@ -37,22 +37,22 @@
               label
                 str "month" ,
               data
-                int 10 } ,
+                int 3 } ,
             {
               label
                 str "day" ,
               data
-                int 11 } ,
+                int 21 } ,
             {
               label
                 str "year" ,
               data
-                int 2016 } } } ,
+                int 2017 } } } ,
         create-date
           std {
-            year 2016 ,
-            month 10 ,
-            day 11 } } ,
+            year 2017 ,
+            month 3 ,
+            day 21 } } ,
       inst {
         repr raw ,
         mol dna ,
@@ -75,8 +75,8 @@
                   subtype strain ,
                   subname "strain" } } ,
               gcode 11 } } } ,
-        comment "Annotated using prokka 1.11 from
- http://www.vicbioinformatics.com" ,
+        comment "Annotated using prokka 1.12 from
+ https://github.com/tseemann/prokka" ,
         user {
           type
             str "NcbiCleanup" ,
@@ -95,22 +95,22 @@
               label
                 str "month" ,
               data
-                int 10 } ,
+                int 3 } ,
             {
               label
                 str "day" ,
               data
-                int 11 } ,
+                int 21 } ,
             {
               label
                 str "year" ,
               data
-                int 2016 } } } ,
+                int 2017 } } } ,
         create-date
           std {
-            year 2016 ,
-            month 10 ,
-            day 11 } } ,
+            year 2017 ,
+            month 3 ,
+            day 21 } } ,
       seq-set {
         seq {
           id {
@@ -234,7 +234,7 @@
                 qual {
                   {
                     qual "inference" ,
-                    val "ab initio prediction:Prodigal:2.60" } } ,
+                    val "ab initio prediction:Prodigal:2.6" } } ,
                 xref {
                   {
                     data
@@ -264,7 +264,7 @@
                 qual {
                   {
                     qual "inference" ,
-                    val "ab initio prediction:Prodigal:2.60" } } ,
+                    val "ab initio prediction:Prodigal:2.6" } } ,
                 xref {
                   {
                     data
@@ -286,8 +286,8 @@
               gcode 11 } } } ,
         molinfo {
           biomol genomic } ,
-        comment "Annotated using prokka 1.11 from
- http://www.vicbioinformatics.com" ,
+        comment "Annotated using prokka 1.12 from
+ https://github.com/tseemann/prokka" ,
         user {
           type
             str "NcbiCleanup" ,
@@ -306,22 +306,22 @@
               label
                 str "month" ,
               data
-                int 10 } ,
+                int 3 } ,
             {
               label
                 str "day" ,
               data
-                int 11 } ,
+                int 21 } ,
             {
               label
                 str "year" ,
               data
-                int 2016 } } } ,
+                int 2017 } } } ,
         create-date
           std {
-            year 2016 ,
-            month 10 ,
-            day 11 } } ,
+            year 2017 ,
+            month 3 ,
+            day 21 } } ,
       inst {
         repr raw ,
         mol dna ,
@@ -342,8 +342,8 @@
                   subtype strain ,
                   subname "strain" } } ,
               gcode 11 } } } ,
-        comment "Annotated using prokka 1.11 from
- http://www.vicbioinformatics.com" ,
+        comment "Annotated using prokka 1.12 from
+ https://github.com/tseemann/prokka" ,
         user {
           type
             str "NcbiCleanup" ,
@@ -362,22 +362,22 @@
               label
                 str "month" ,
               data
-                int 10 } ,
+                int 3 } ,
             {
               label
                 str "day" ,
               data
-                int 11 } ,
+                int 21 } ,
             {
               label
                 str "year" ,
               data
-                int 2016 } } } ,
+                int 2017 } } } ,
         create-date
           std {
-            year 2016 ,
-            month 10 ,
-            day 11 } } ,
+            year 2017 ,
+            month 3 ,
+            day 21 } } ,
       seq-set {
         seq {
           id {
@@ -473,7 +473,7 @@
                 qual {
                   {
                     qual "inference" ,
-                    val "ab initio prediction:Prodigal:2.60" } } ,
+                    val "ab initio prediction:Prodigal:2.6" } } ,
                 xref {
                   {
                     data
@@ -491,8 +491,8 @@
                   subtype strain ,
                   subname "strain" } } ,
               gcode 11 } } } ,
-        comment "Annotated using prokka 1.11 from
- http://www.vicbioinformatics.com" ,
+        comment "Annotated using prokka 1.12 from
+ https://github.com/tseemann/prokka" ,
         user {
           type
             str "NcbiCleanup" ,
@@ -511,22 +511,22 @@
               label
                 str "month" ,
               data
-                int 10 } ,
+                int 3 } ,
             {
               label
                 str "day" ,
               data
-                int 11 } ,
+                int 21 } ,
             {
               label
                 str "year" ,
               data
-                int 2016 } } } ,
+                int 2017 } } } ,
         create-date
           std {
-            year 2016 ,
-            month 10 ,
-            day 11 } } ,
+            year 2017 ,
+            month 3 ,
+            day 21 } } ,
       seq-set {
         seq {
           id {
@@ -609,7 +609,7 @@
                 qual {
                   {
                     qual "inference" ,
-                    val "ab initio prediction:Prodigal:2.60" } } ,
+                    val "ab initio prediction:Prodigal:2.6" } } ,
                 xref {
                   {
                     data
@@ -627,8 +627,8 @@
                   subtype strain ,
                   subname "strain" } } ,
               gcode 11 } } } ,
-        comment "Annotated using prokka 1.11 from
- http://www.vicbioinformatics.com" ,
+        comment "Annotated using prokka 1.12 from
+ https://github.com/tseemann/prokka" ,
         user {
           type
             str "NcbiCleanup" ,
@@ -647,22 +647,22 @@
               label
                 str "month" ,
               data
-                int 10 } ,
+                int 3 } ,
             {
               label
                 str "day" ,
               data
-                int 11 } ,
+                int 21 } ,
             {
               label
                 str "year" ,
               data
-                int 2016 } } } ,
+                int 2017 } } } ,
         create-date
           std {
-            year 2016 ,
-            month 10 ,
-            day 11 } } ,
+            year 2017 ,
+            month 3 ,
+            day 21 } } ,
       seq-set {
         seq {
           id {
@@ -767,7 +767,7 @@
                 qual {
                   {
                     qual "inference" ,
-                    val "ab initio prediction:Prodigal:2.60" } } ,
+                    val "ab initio prediction:Prodigal:2.6" } } ,
                 xref {
                   {
                     data
@@ -789,8 +789,8 @@
               gcode 11 } } } ,
         molinfo {
           biomol genomic } ,
-        comment "Annotated using prokka 1.11 from
- http://www.vicbioinformatics.com" ,
+        comment "Annotated using prokka 1.12 from
+ https://github.com/tseemann/prokka" ,
         user {
           type
             str "NcbiCleanup" ,
@@ -809,22 +809,22 @@
               label
                 str "month" ,
               data
-                int 10 } ,
+                int 3 } ,
             {
               label
                 str "day" ,
               data
-                int 11 } ,
+                int 21 } ,
             {
               label
                 str "year" ,
               data
-                int 2016 } } } ,
+                int 2017 } } } ,
         create-date
           std {
-            year 2016 ,
-            month 10 ,
-            day 11 } } ,
+            year 2017 ,
+            month 3 ,
+            day 21 } } ,
       inst {
         repr raw ,
         mol dna ,