Mercurial > repos > crs4 > prokka
diff prokka.xml @ 3:fffa1ae330ae draft
Use $GALAXY_SLOTS instead of $PROKKA_SITE_OPTIONS. Upgrade Barrnap dependency to v. 0.3. Upgrade Infernal dependency to v. 1.1. Depend on package_gnu_parallel_20131122 (requires Galaxy release_2013.11.04 or later).
author | crs4 |
---|---|
date | Mon, 09 Dec 2013 04:58:14 -0500 |
parents | 4bafaa074484 |
children | 5c0030f52b83 |
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--- a/prokka.xml Fri Oct 25 08:59:51 2013 -0400 +++ b/prokka.xml Mon Dec 09 04:58:14 2013 -0500 @@ -1,4 +1,4 @@ -<tool id="prokka" name="Prokka" version="1.1.0"> +<tool id="prokka" name="Prokka" version="1.2.0"> <description>prokaryotic genome annotation</description> <requirements> <requirement type="package" version="2.2.28">blast+</requirement> @@ -6,15 +6,15 @@ <requirement type="package" version="1.2.36">aragorn</requirement> <requirement type="package" version="2.60">prodigal</requirement> <requirement type="binary">tbl2asn</requirement> - <requirement type="binary">parallel</requirement> - <requirement type="package" version="0.2">barrnap</requirement> - <requirement type="package" version="1.1rc4">infernal</requirement> + <requirement type="package" version="20131122">gnu_parallel</requirement> + <requirement type="package" version="0.3">barrnap</requirement> + <requirement type="package" version="1.1">infernal</requirement> <requirement type="package" version="1.7">prokka</requirement> </requirements> <version_command>prokka --version</version_command> <command> prokka - \${PROKKA_SITE_OPTIONS:---cpus 8} + --cpus \${GALAXY_SLOTS:-8} --quiet ## to avoid non-error messages written to stderr --outdir outdir --prefix prokka ## used in outputs section #if $locustag