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Use GALAXY_SLOTS for multithreading in Bowtie. Create symlinks instead of copying files. Specify in help that Bowtie is used to align the reads to the contigs. Add readme.rst .
author crs4
date Mon, 03 Mar 2014 11:28:41 -0500
parents 988d5a82291a
children
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87ffe493b6c1 Use GALAXY_SLOTS for multithreading in Bowtie. Create symlinks instead of copying files. Specify in help that Bowtie is used to align the reads to the contigs. Add readme.rst .
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1 Copyright © 2013-2014 CRS4 Srl. http://www.crs4.it/
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2 Created by:
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3 Gianmauro Cuccuru <gianmauro.cuccuru@crs4.it>
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4 Nicola Soranzo <nicola.soranzo@crs4.it>
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5
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6 Permission is hereby granted, free of charge, to any person obtaining a
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7 copy of this software and associated documentation files (the
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8 "Software"), to deal in the Software without restriction, including
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9 without limitation the rights to use, copy, modify, merge, publish,
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10 distribute, sublicense, and/or sell copies of the Software, and to
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11 permit persons to whom the Software is furnished to do so, subject to
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12 the following conditions:
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13
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14 The above copyright notice and this permission notice shall be included
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15 in all copies or substantial portions of the Software.
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16
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17 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
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18 OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
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19 MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
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20 IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY
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21 CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
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22 TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE
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23 SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.